Hb_000304_040

Information

Type -
Description -
Location Contig304: 11752-12444
Sequence    

Annotation

kegg
ID rcu:RCOM_1000280
description Nicotianamine synthase, putative (EC:2.5.1.43)
nr
ID XP_012084060.1
description PREDICTED: nicotianamine synthase-like [Jatropha curcas]
swissprot
ID Q9XGI7
description Nicotianamine synthase OS=Solanum lycopersicum GN=CHLN PE=2 SV=1
trembl
ID A0A067JV98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18981 PE=4 SV=1
Gene Ontology
ID GO:0030410
description nicotianamine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000304_040 0.0 - - PREDICTED: nicotianamine synthase-like [Jatropha curcas]
2 Hb_001414_120 0.0475916291 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
3 Hb_004458_010 0.0985037437 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
4 Hb_003925_130 0.1284959961 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_001957_050 0.1359907463 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_000769_050 0.144470246 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
7 Hb_000373_110 0.1522597891 - - Nodulin, putative [Ricinus communis]
8 Hb_000167_090 0.1531724515 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002548_010 0.1616455992 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
10 Hb_006590_030 0.1621915846 - - unknown [Populus trichocarpa]
11 Hb_002422_010 0.1651775221 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
12 Hb_023536_020 0.1670192432 - - Nicotianamine synthase, putative [Ricinus communis]
13 Hb_002869_040 0.1678819128 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
14 Hb_001104_250 0.1742872472 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
15 Hb_039410_010 0.1749790615 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
16 Hb_005040_010 0.1752793068 - - hypothetical protein RCOM_1110360 [Ricinus communis]
17 Hb_168031_010 0.1759214744 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
18 Hb_001808_010 0.176020399 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
19 Hb_003012_010 0.1834749022 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000433_060 0.1858265948 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]

Gene co-expression network

sample Hb_000304_040 Hb_000304_040 Hb_001414_120 Hb_001414_120 Hb_000304_040--Hb_001414_120 Hb_004458_010 Hb_004458_010 Hb_000304_040--Hb_004458_010 Hb_003925_130 Hb_003925_130 Hb_000304_040--Hb_003925_130 Hb_001957_050 Hb_001957_050 Hb_000304_040--Hb_001957_050 Hb_000769_050 Hb_000769_050 Hb_000304_040--Hb_000769_050 Hb_000373_110 Hb_000373_110 Hb_000304_040--Hb_000373_110 Hb_001414_120--Hb_004458_010 Hb_001414_120--Hb_000769_050 Hb_001414_120--Hb_001957_050 Hb_000167_090 Hb_000167_090 Hb_001414_120--Hb_000167_090 Hb_002548_010 Hb_002548_010 Hb_001414_120--Hb_002548_010 Hb_004458_010--Hb_001957_050 Hb_005040_010 Hb_005040_010 Hb_004458_010--Hb_005040_010 Hb_003602_080 Hb_003602_080 Hb_004458_010--Hb_003602_080 Hb_006590_030 Hb_006590_030 Hb_004458_010--Hb_006590_030 Hb_003925_130--Hb_001414_120 Hb_003925_130--Hb_000769_050 Hb_000925_020 Hb_000925_020 Hb_003925_130--Hb_000925_020 Hb_178711_010 Hb_178711_010 Hb_003925_130--Hb_178711_010 Hb_003925_130--Hb_002548_010 Hb_002869_040 Hb_002869_040 Hb_001957_050--Hb_002869_040 Hb_001957_050--Hb_006590_030 Hb_001957_050--Hb_005040_010 Hb_001957_050--Hb_000167_090 Hb_039410_010 Hb_039410_010 Hb_001957_050--Hb_039410_010 Hb_002420_030 Hb_002420_030 Hb_001957_050--Hb_002420_030 Hb_001104_250 Hb_001104_250 Hb_000769_050--Hb_001104_250 Hb_000769_050--Hb_002548_010 Hb_123887_010 Hb_123887_010 Hb_000769_050--Hb_123887_010 Hb_000152_090 Hb_000152_090 Hb_000769_050--Hb_000152_090 Hb_000769_050--Hb_000167_090 Hb_003442_020 Hb_003442_020 Hb_000769_050--Hb_003442_020 Hb_002411_070 Hb_002411_070 Hb_000373_110--Hb_002411_070 Hb_168031_010 Hb_168031_010 Hb_000373_110--Hb_168031_010 Hb_023536_020 Hb_023536_020 Hb_000373_110--Hb_023536_020 Hb_004125_080 Hb_004125_080 Hb_000373_110--Hb_004125_080 Hb_002116_020 Hb_002116_020 Hb_000373_110--Hb_002116_020 Hb_000433_060 Hb_000433_060 Hb_000373_110--Hb_000433_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.318516 0.0268731 0.455799 0 0.0315125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis