Hb_000304_050

Information

Type transcription factor
Description TF Family: GRAS
Location Contig304: 13243-25893
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10600g
description POPTRDRAFT_564398; hypothetical protein
nr
ID XP_012084061.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
swissprot
ID Q9FJY7
description Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
trembl
ID A0A067JYN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32068: 13425-14413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000304_050 0.0 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
2 Hb_004480_040 0.0598612855 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
3 Hb_034243_020 0.0773042942 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
4 Hb_000264_100 0.0793992354 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001247_070 0.083251336 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
6 Hb_000032_010 0.0837992095 - - crooked neck protein, putative [Ricinus communis]
7 Hb_000169_130 0.0864953901 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
8 Hb_001718_090 0.0867119272 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
9 Hb_000441_070 0.0888444008 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
10 Hb_004543_030 0.0895753276 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
11 Hb_000832_320 0.0902420285 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
12 Hb_019153_020 0.0920732617 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
13 Hb_000820_120 0.0922542823 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
14 Hb_012799_120 0.0951955856 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
15 Hb_157966_010 0.0969802086 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
16 Hb_030565_090 0.096981596 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
17 Hb_007576_120 0.0977040744 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
18 Hb_006663_040 0.0984427426 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
19 Hb_000236_220 0.0989699827 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
20 Hb_000997_030 0.0998241507 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]

Gene co-expression network

sample Hb_000304_050 Hb_000304_050 Hb_004480_040 Hb_004480_040 Hb_000304_050--Hb_004480_040 Hb_034243_020 Hb_034243_020 Hb_000304_050--Hb_034243_020 Hb_000264_100 Hb_000264_100 Hb_000304_050--Hb_000264_100 Hb_001247_070 Hb_001247_070 Hb_000304_050--Hb_001247_070 Hb_000032_010 Hb_000032_010 Hb_000304_050--Hb_000032_010 Hb_000169_130 Hb_000169_130 Hb_000304_050--Hb_000169_130 Hb_004480_040--Hb_000169_130 Hb_000236_220 Hb_000236_220 Hb_004480_040--Hb_000236_220 Hb_000441_070 Hb_000441_070 Hb_004480_040--Hb_000441_070 Hb_000832_320 Hb_000832_320 Hb_004480_040--Hb_000832_320 Hb_000556_170 Hb_000556_170 Hb_004480_040--Hb_000556_170 Hb_004543_030 Hb_004543_030 Hb_034243_020--Hb_004543_030 Hb_004884_010 Hb_004884_010 Hb_034243_020--Hb_004884_010 Hb_001493_040 Hb_001493_040 Hb_034243_020--Hb_001493_040 Hb_007576_120 Hb_007576_120 Hb_034243_020--Hb_007576_120 Hb_010315_090 Hb_010315_090 Hb_034243_020--Hb_010315_090 Hb_133047_010 Hb_133047_010 Hb_034243_020--Hb_133047_010 Hb_000120_610 Hb_000120_610 Hb_000264_100--Hb_000120_610 Hb_000997_030 Hb_000997_030 Hb_000264_100--Hb_000997_030 Hb_030565_090 Hb_030565_090 Hb_000264_100--Hb_030565_090 Hb_140049_020 Hb_140049_020 Hb_000264_100--Hb_140049_020 Hb_000594_020 Hb_000594_020 Hb_000264_100--Hb_000594_020 Hb_004899_070 Hb_004899_070 Hb_000264_100--Hb_004899_070 Hb_000139_090 Hb_000139_090 Hb_001247_070--Hb_000139_090 Hb_001268_350 Hb_001268_350 Hb_001247_070--Hb_001268_350 Hb_124315_020 Hb_124315_020 Hb_001247_070--Hb_124315_020 Hb_001930_010 Hb_001930_010 Hb_001247_070--Hb_001930_010 Hb_002188_110 Hb_002188_110 Hb_001247_070--Hb_002188_110 Hb_000174_220 Hb_000174_220 Hb_001247_070--Hb_000174_220 Hb_019153_020 Hb_019153_020 Hb_000032_010--Hb_019153_020 Hb_003040_020 Hb_003040_020 Hb_000032_010--Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_000032_010--Hb_004429_160 Hb_000753_100 Hb_000753_100 Hb_000032_010--Hb_000753_100 Hb_000191_130 Hb_000191_130 Hb_000032_010--Hb_000191_130 Hb_000856_140 Hb_000856_140 Hb_000032_010--Hb_000856_140 Hb_010738_010 Hb_010738_010 Hb_000169_130--Hb_010738_010 Hb_003785_040 Hb_003785_040 Hb_000169_130--Hb_003785_040 Hb_000169_130--Hb_000441_070 Hb_065525_060 Hb_065525_060 Hb_000169_130--Hb_065525_060 Hb_003633_070 Hb_003633_070 Hb_000169_130--Hb_003633_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23502 1.60303 0.463099 0.249181 1.20269 1.04494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.503084 0.395904 0.687094 0.99728 0.524485

CAGE analysis