Hb_000304_070

Information

Type -
Description -
Location Contig304: 33466-36373
Sequence    

Annotation

kegg
ID rcu:RCOM_1000310
description non-canonical ubiquitin conjugating enzyme, putative (EC:6.3.2.19)
nr
ID XP_002519212.1
description non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
swissprot
ID Q9LSP7
description Ubiquitin-conjugating enzyme E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1
trembl
ID B9RZP3
description Non-canonical ubiquitin conjugating enzyme, putative OS=Ricinus communis GN=RCOM_1000310 PE=4 SV=1
Gene Ontology
ID GO:0005783
description ubiquitin-conjugating enzyme e2 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32070: 33517-36340 , PASA_asmbl_32071: 34550-34768
cDNA
(Sanger)
(ID:Location)		 023_N19.ab1: 34157-36337 , 046_N24.ab1: 34195-36337 , 047_C20.ab1: 34085-36293

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000304_070 0.0 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
2 Hb_010863_050 0.0657318947 - - OTU domain-containing protein 6B, putative [Ricinus communis]
3 Hb_001623_270 0.072517817 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
4 Hb_001824_080 0.0730175452 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
5 Hb_005588_080 0.0730278686 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
6 Hb_000254_100 0.0738725625 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
7 Hb_000207_300 0.0747054883 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
8 Hb_000757_030 0.0782570728 - - radical sam protein, putative [Ricinus communis]
9 Hb_021374_030 0.0790346764 - - hypothetical protein RCOM_0351490 [Ricinus communis]
10 Hb_005494_010 0.0792062825 - - catalytic, putative [Ricinus communis]
11 Hb_000035_090 0.0823682954 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
12 Hb_030414_040 0.0829545603 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
13 Hb_004109_120 0.0834050686 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
14 Hb_000227_170 0.0843349738 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_113853_010 0.0859437842 - - 50S ribosomal protein L2, putative [Ricinus communis]
16 Hb_107879_010 0.0861724796 - - phosphoglycerate mutase, putative [Ricinus communis]
17 Hb_000230_400 0.086252698 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001957_020 0.0866705751 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
19 Hb_000028_520 0.0868545749 - - hypothetical protein L484_025125 [Morus notabilis]
20 Hb_000212_230 0.0870262232 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000304_070 Hb_000304_070 Hb_010863_050 Hb_010863_050 Hb_000304_070--Hb_010863_050 Hb_001623_270 Hb_001623_270 Hb_000304_070--Hb_001623_270 Hb_001824_080 Hb_001824_080 Hb_000304_070--Hb_001824_080 Hb_005588_080 Hb_005588_080 Hb_000304_070--Hb_005588_080 Hb_000254_100 Hb_000254_100 Hb_000304_070--Hb_000254_100 Hb_000207_300 Hb_000207_300 Hb_000304_070--Hb_000207_300 Hb_012150_030 Hb_012150_030 Hb_010863_050--Hb_012150_030 Hb_004452_120 Hb_004452_120 Hb_010863_050--Hb_004452_120 Hb_000212_230 Hb_000212_230 Hb_010863_050--Hb_000212_230 Hb_002675_250 Hb_002675_250 Hb_010863_050--Hb_002675_250 Hb_035273_020 Hb_035273_020 Hb_010863_050--Hb_035273_020 Hb_000176_020 Hb_000176_020 Hb_001623_270--Hb_000176_020 Hb_183433_010 Hb_183433_010 Hb_001623_270--Hb_183433_010 Hb_000789_320 Hb_000789_320 Hb_001623_270--Hb_000789_320 Hb_171900_090 Hb_171900_090 Hb_001623_270--Hb_171900_090 Hb_014834_150 Hb_014834_150 Hb_001623_270--Hb_014834_150 Hb_000230_400 Hb_000230_400 Hb_001623_270--Hb_000230_400 Hb_004109_120 Hb_004109_120 Hb_001824_080--Hb_004109_120 Hb_001824_080--Hb_000254_100 Hb_004109_260 Hb_004109_260 Hb_001824_080--Hb_004109_260 Hb_004339_040 Hb_004339_040 Hb_001824_080--Hb_004339_040 Hb_007821_020 Hb_007821_020 Hb_001824_080--Hb_007821_020 Hb_005588_080--Hb_000230_400 Hb_000059_380 Hb_000059_380 Hb_005588_080--Hb_000059_380 Hb_003428_010 Hb_003428_010 Hb_005588_080--Hb_003428_010 Hb_003513_010 Hb_003513_010 Hb_005588_080--Hb_003513_010 Hb_003861_060 Hb_003861_060 Hb_005588_080--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_005588_080--Hb_007007_120 Hb_000847_080 Hb_000847_080 Hb_000254_100--Hb_000847_080 Hb_000254_100--Hb_004109_120 Hb_030414_040 Hb_030414_040 Hb_000254_100--Hb_030414_040 Hb_000567_070 Hb_000567_070 Hb_000254_100--Hb_000567_070 Hb_003186_020 Hb_003186_020 Hb_000254_100--Hb_003186_020 Hb_000207_300--Hb_004109_120 Hb_003728_100 Hb_003728_100 Hb_000207_300--Hb_003728_100 Hb_009225_020 Hb_009225_020 Hb_000207_300--Hb_009225_020 Hb_000212_440 Hb_000212_440 Hb_000207_300--Hb_000212_440 Hb_000207_300--Hb_001824_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.2431 37.3187 86.0359 42.026 37.8638 31.311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.915 39.4871 32.5373 40.5185 68.5209

CAGE analysis