Hb_000304_080

Information

Type -
Description -
Location Contig304: 38084-46314
Sequence    

Annotation

kegg
ID rcu:RCOM_1034260
description splicing endonuclease positive effector sen1, putative
nr
ID XP_012092747.1
description PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
swissprot
ID O94387
description Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A10.10c PE=3 SV=1
trembl
ID A0A067JL69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09856 PE=4 SV=1
Gene Ontology
ID GO:0004519
description uncharacterized atp-dependent helicase -like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32072: 38136-46276 , PASA_asmbl_32073: 38136-46276 , PASA_asmbl_32074: 38136-46276 , PASA_asmbl_32075: 38136-46276 , PASA_asmbl_32076: 46032-46163 , PASA_asmbl_32077: 45044-45239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000304_080 0.0 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
2 Hb_001124_130 0.061926097 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
3 Hb_000025_350 0.0681637989 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
4 Hb_001357_200 0.072781046 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
5 Hb_002042_050 0.0738054403 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
6 Hb_000476_060 0.0761890141 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
7 Hb_000567_230 0.0769840517 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
8 Hb_011618_070 0.0800752348 - - NMDA receptor-regulated protein [Medicago truncatula]
9 Hb_002272_030 0.0803952384 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
10 Hb_009288_010 0.0810361334 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_002716_060 0.082117177 - - carboxylesterase np, putative [Ricinus communis]
12 Hb_000103_340 0.0829293825 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
13 Hb_010068_080 0.0860852097 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
14 Hb_001488_020 0.0863041487 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
15 Hb_000788_030 0.087303426 - - PREDICTED: dynamin-2A [Jatropha curcas]
16 Hb_001025_120 0.0877920993 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
17 Hb_001014_070 0.0889321093 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
18 Hb_000975_210 0.0891341521 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
19 Hb_001014_060 0.0898570143 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
20 Hb_002071_070 0.0901812381 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000304_080 Hb_000304_080 Hb_001124_130 Hb_001124_130 Hb_000304_080--Hb_001124_130 Hb_000025_350 Hb_000025_350 Hb_000304_080--Hb_000025_350 Hb_001357_200 Hb_001357_200 Hb_000304_080--Hb_001357_200 Hb_002042_050 Hb_002042_050 Hb_000304_080--Hb_002042_050 Hb_000476_060 Hb_000476_060 Hb_000304_080--Hb_000476_060 Hb_000567_230 Hb_000567_230 Hb_000304_080--Hb_000567_230 Hb_007894_150 Hb_007894_150 Hb_001124_130--Hb_007894_150 Hb_001124_130--Hb_002042_050 Hb_002071_070 Hb_002071_070 Hb_001124_130--Hb_002071_070 Hb_010068_080 Hb_010068_080 Hb_001124_130--Hb_010068_080 Hb_001124_130--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_000025_350--Hb_001014_060 Hb_000025_350--Hb_001357_200 Hb_001014_070 Hb_001014_070 Hb_000025_350--Hb_001014_070 Hb_003913_130 Hb_003913_130 Hb_000025_350--Hb_003913_130 Hb_000025_350--Hb_002042_050 Hb_001357_200--Hb_001014_060 Hb_001357_200--Hb_003913_130 Hb_001357_200--Hb_001014_070 Hb_007533_040 Hb_007533_040 Hb_001357_200--Hb_007533_040 Hb_002272_030 Hb_002272_030 Hb_002042_050--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_002042_050--Hb_020178_040 Hb_000243_260 Hb_000243_260 Hb_002042_050--Hb_000243_260 Hb_006100_020 Hb_006100_020 Hb_002042_050--Hb_006100_020 Hb_002042_050--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_002042_050--Hb_001817_170 Hb_003098_070 Hb_003098_070 Hb_000476_060--Hb_003098_070 Hb_089839_010 Hb_089839_010 Hb_000476_060--Hb_089839_010 Hb_001635_110 Hb_001635_110 Hb_000476_060--Hb_001635_110 Hb_000788_030 Hb_000788_030 Hb_000476_060--Hb_000788_030 Hb_004324_360 Hb_004324_360 Hb_000476_060--Hb_004324_360 Hb_000120_890 Hb_000120_890 Hb_000476_060--Hb_000120_890 Hb_000567_230--Hb_002272_030 Hb_000567_230--Hb_001817_170 Hb_000703_190 Hb_000703_190 Hb_000567_230--Hb_000703_190 Hb_000567_230--Hb_006100_020 Hb_000139_080 Hb_000139_080 Hb_000567_230--Hb_000139_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.22969 11.7601 14.071 9.38246 5.90119 4.89983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20589 7.66849 10.9546 7.60901 12.349

CAGE analysis