Hb_000307_010

Information

Type -
Description -
Location Contig307: 55608-56641
Sequence    

Annotation

kegg
ID rcu:RCOM_1599820
description hypothetical protein
nr
ID XP_012073707.1
description PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
swissprot
ID Q7JUR6
description Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1
trembl
ID A0A067KYD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32402: 55289-56505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_010 0.0 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
2 Hb_000065_090 0.1462937191 - - potassium channel tetramerization domain-containing protein, putative [Ricinus communis]
3 Hb_004116_180 0.1515572054 - - PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
4 Hb_004013_020 0.1538826893 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
5 Hb_002368_030 0.1598315679 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
6 Hb_000567_240 0.1701323391 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A-like [Jatropha curcas]
7 Hb_004994_300 0.1714944989 - - synaptotagmin, putative [Ricinus communis]
8 Hb_172421_010 0.1747093475 - - cysteine protease [Hevea brasiliensis]
9 Hb_000853_220 0.1757249697 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
10 Hb_002073_090 0.1789541866 - - PREDICTED: copper transporter 6-like [Jatropha curcas]
11 Hb_138585_100 0.1821239704 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
12 Hb_000579_030 0.1836648432 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
13 Hb_001541_160 0.1841496879 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
14 Hb_013405_180 0.1863252566 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
15 Hb_007313_070 0.1876641919 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
16 Hb_000975_370 0.1879595955 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
17 Hb_033152_100 0.1885347858 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000258_370 0.1899191798 - - hypothetical protein [Ricinus communis]
19 Hb_002774_150 0.1915591563 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
20 Hb_003605_220 0.1936951008 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]

Gene co-expression network

sample Hb_000307_010 Hb_000307_010 Hb_000065_090 Hb_000065_090 Hb_000307_010--Hb_000065_090 Hb_004116_180 Hb_004116_180 Hb_000307_010--Hb_004116_180 Hb_004013_020 Hb_004013_020 Hb_000307_010--Hb_004013_020 Hb_002368_030 Hb_002368_030 Hb_000307_010--Hb_002368_030 Hb_000567_240 Hb_000567_240 Hb_000307_010--Hb_000567_240 Hb_004994_300 Hb_004994_300 Hb_000307_010--Hb_004994_300 Hb_000065_090--Hb_004013_020 Hb_000065_090--Hb_004116_180 Hb_033152_100 Hb_033152_100 Hb_000065_090--Hb_033152_100 Hb_000221_090 Hb_000221_090 Hb_000065_090--Hb_000221_090 Hb_001133_010 Hb_001133_010 Hb_000065_090--Hb_001133_010 Hb_000579_030 Hb_000579_030 Hb_004116_180--Hb_000579_030 Hb_001673_060 Hb_001673_060 Hb_004116_180--Hb_001673_060 Hb_004116_180--Hb_033152_100 Hb_001226_110 Hb_001226_110 Hb_004116_180--Hb_001226_110 Hb_000920_290 Hb_000920_290 Hb_004116_180--Hb_000920_290 Hb_000340_080 Hb_000340_080 Hb_004116_180--Hb_000340_080 Hb_000753_120 Hb_000753_120 Hb_004013_020--Hb_000753_120 Hb_000975_370 Hb_000975_370 Hb_004013_020--Hb_000975_370 Hb_000836_600 Hb_000836_600 Hb_004013_020--Hb_000836_600 Hb_000230_470 Hb_000230_470 Hb_004013_020--Hb_000230_470 Hb_001541_160 Hb_001541_160 Hb_004013_020--Hb_001541_160 Hb_002774_150 Hb_002774_150 Hb_002368_030--Hb_002774_150 Hb_001662_170 Hb_001662_170 Hb_002368_030--Hb_001662_170 Hb_002471_020 Hb_002471_020 Hb_002368_030--Hb_002471_020 Hb_172421_010 Hb_172421_010 Hb_002368_030--Hb_172421_010 Hb_002534_050 Hb_002534_050 Hb_002368_030--Hb_002534_050 Hb_000589_420 Hb_000589_420 Hb_000567_240--Hb_000589_420 Hb_006717_010 Hb_006717_010 Hb_000567_240--Hb_006717_010 Hb_000567_240--Hb_004013_020 Hb_000567_240--Hb_000065_090 Hb_000567_240--Hb_000753_120 Hb_003605_220 Hb_003605_220 Hb_004994_300--Hb_003605_220 Hb_007313_070 Hb_007313_070 Hb_004994_300--Hb_007313_070 Hb_000270_230 Hb_000270_230 Hb_004994_300--Hb_000270_230 Hb_004994_300--Hb_172421_010 Hb_004032_310 Hb_004032_310 Hb_004994_300--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_004994_300--Hb_003752_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.97381 35.7645 5.99585 16.6605 2.90732 8.22979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.16707 1.12636 1.67109 2.77434 19.3728

CAGE analysis