Hb_000307_070

Information

Type -
Description -
Location Contig307: 77559-94080
Sequence    

Annotation

kegg
ID rcu:RCOM_1599780
description protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002510613.1
description protein kinase, putative [Ricinus communis]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID B9R8H0
description Protein kinase, putative OS=Ricinus communis GN=RCOM_1599780 PE=4 SV=1
Gene Ontology
ID GO:0004715
description act-like protein tyrosine kinase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32411: 94143-94251
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_070 0.0 - - protein kinase, putative [Ricinus communis]
2 Hb_001587_040 0.1011936729 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
3 Hb_000820_140 0.1099473494 - - histone H4 [Zea mays]
4 Hb_000334_050 0.1111700636 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
5 Hb_000189_130 0.1129255846 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
6 Hb_005917_020 0.1170020359 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
7 Hb_000310_060 0.1173061609 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
8 Hb_001322_230 0.1200623693 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
9 Hb_003680_090 0.1207145549 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
10 Hb_001390_100 0.1231339082 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
11 Hb_001009_140 0.1251892062 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
12 Hb_000589_170 0.1254098042 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
13 Hb_000270_280 0.1282482983 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
14 Hb_011476_030 0.1298964419 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
15 Hb_005656_170 0.1305387129 - - PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
16 Hb_002529_090 0.1311472683 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
17 Hb_000011_560 0.1314141133 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
18 Hb_101334_020 0.1323604194 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
19 Hb_004545_120 0.1330746471 - - PREDICTED: uncharacterized protein LOC105647604 [Jatropha curcas]
20 Hb_001307_100 0.1330941738 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000307_070 Hb_000307_070 Hb_001587_040 Hb_001587_040 Hb_000307_070--Hb_001587_040 Hb_000820_140 Hb_000820_140 Hb_000307_070--Hb_000820_140 Hb_000334_050 Hb_000334_050 Hb_000307_070--Hb_000334_050 Hb_000189_130 Hb_000189_130 Hb_000307_070--Hb_000189_130 Hb_005917_020 Hb_005917_020 Hb_000307_070--Hb_005917_020 Hb_000310_060 Hb_000310_060 Hb_000307_070--Hb_000310_060 Hb_001587_040--Hb_000310_060 Hb_003398_040 Hb_003398_040 Hb_001587_040--Hb_003398_040 Hb_005527_060 Hb_005527_060 Hb_001587_040--Hb_005527_060 Hb_000996_080 Hb_000996_080 Hb_001587_040--Hb_000996_080 Hb_001390_100 Hb_001390_100 Hb_001587_040--Hb_001390_100 Hb_001322_230 Hb_001322_230 Hb_000820_140--Hb_001322_230 Hb_068194_010 Hb_068194_010 Hb_000820_140--Hb_068194_010 Hb_000676_020 Hb_000676_020 Hb_000820_140--Hb_000676_020 Hb_000820_140--Hb_001587_040 Hb_004348_040 Hb_004348_040 Hb_000820_140--Hb_004348_040 Hb_004223_270 Hb_004223_270 Hb_000334_050--Hb_004223_270 Hb_022425_050 Hb_022425_050 Hb_000334_050--Hb_022425_050 Hb_000933_110 Hb_000933_110 Hb_000334_050--Hb_000933_110 Hb_027445_100 Hb_027445_100 Hb_000334_050--Hb_027445_100 Hb_005731_100 Hb_005731_100 Hb_000334_050--Hb_005731_100 Hb_000327_200 Hb_000327_200 Hb_000334_050--Hb_000327_200 Hb_001009_140 Hb_001009_140 Hb_000189_130--Hb_001009_140 Hb_000331_420 Hb_000331_420 Hb_000189_130--Hb_000331_420 Hb_000589_170 Hb_000589_170 Hb_000189_130--Hb_000589_170 Hb_000189_130--Hb_001587_040 Hb_000189_130--Hb_001322_230 Hb_003680_090 Hb_003680_090 Hb_005917_020--Hb_003680_090 Hb_004502_010 Hb_004502_010 Hb_005917_020--Hb_004502_010 Hb_011114_020 Hb_011114_020 Hb_005917_020--Hb_011114_020 Hb_001959_060 Hb_001959_060 Hb_005917_020--Hb_001959_060 Hb_002811_310 Hb_002811_310 Hb_005917_020--Hb_002811_310 Hb_000270_280 Hb_000270_280 Hb_000310_060--Hb_000270_280 Hb_000310_060--Hb_003398_040 Hb_000940_030 Hb_000940_030 Hb_000310_060--Hb_000940_030 Hb_000310_060--Hb_000327_200 Hb_000310_060--Hb_005527_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.465141 1.67094 5.3439 2.19787 0.170244 0.373111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38102 1.41646 0.844386 2.12457 4.74509

CAGE analysis