Hb_000307_080

Information

Type -
Description -
Location Contig307: 100915-105931
Sequence    

Annotation

kegg
ID rcu:RCOM_1599670
description hypothetical protein
nr
ID XP_002510612.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3EBZ2
description F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1
trembl
ID B9R8G9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1599670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32412: 101476-101809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000173_070 0.0009918442 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
3 Hb_003995_040 0.0016723404 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
4 Hb_000417_240 0.0018124717 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
5 Hb_000280_070 0.0019618866 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
6 Hb_000784_050 0.0024865884 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
7 Hb_002151_140 0.0042171198 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
8 Hb_007975_070 0.006758084 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
9 Hb_105767_030 0.0081623503 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003667_030 0.0109614137 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
11 Hb_000489_050 0.0130528707 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
12 Hb_000334_100 0.0165630106 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
13 Hb_130862_010 0.0174207364 - - purine permease, putative [Ricinus communis]
14 Hb_090511_010 0.0196711204 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
15 Hb_012675_030 0.0199781644 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
16 Hb_000008_100 0.0201362966 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
17 Hb_002391_280 0.0212179172 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
18 Hb_002817_020 0.0215873232 - - -
19 Hb_000769_040 0.024762271 - - hypothetical protein VITISV_028082 [Vitis vinifera]
20 Hb_000221_010 0.0257894868 - - polyprotein [Oryza australiensis]

Gene co-expression network

sample Hb_000307_080 Hb_000307_080 Hb_000173_070 Hb_000173_070 Hb_000307_080--Hb_000173_070 Hb_003995_040 Hb_003995_040 Hb_000307_080--Hb_003995_040 Hb_000417_240 Hb_000417_240 Hb_000307_080--Hb_000417_240 Hb_000280_070 Hb_000280_070 Hb_000307_080--Hb_000280_070 Hb_000784_050 Hb_000784_050 Hb_000307_080--Hb_000784_050 Hb_002151_140 Hb_002151_140 Hb_000307_080--Hb_002151_140 Hb_000173_070--Hb_003995_040 Hb_000173_070--Hb_000417_240 Hb_000173_070--Hb_000280_070 Hb_000173_070--Hb_000784_050 Hb_000173_070--Hb_002151_140 Hb_003995_040--Hb_000417_240 Hb_003995_040--Hb_000280_070 Hb_003995_040--Hb_000784_050 Hb_007975_070 Hb_007975_070 Hb_003995_040--Hb_007975_070 Hb_000417_240--Hb_000280_070 Hb_000417_240--Hb_000784_050 Hb_000417_240--Hb_007975_070 Hb_000280_070--Hb_000784_050 Hb_000280_070--Hb_002151_140 Hb_000784_050--Hb_002151_140 Hb_002151_140--Hb_003995_040 Hb_002151_140--Hb_000417_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.118034 0.0324612 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis