Hb_000307_090

Information

Type -
Description -
Location Contig307: 107261-108793
Sequence    

Annotation

kegg
ID cic:CICLE_v10002475mg
description hypothetical protein
nr
ID XP_006435267.1
description hypothetical protein CICLE_v10002475mg [Citrus clementina]
swissprot
ID Q9D113
description DNL-type zinc finger protein OS=Mus musculus GN=Dnlz PE=2 SV=1
trembl
ID A0A067HAY5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028299mg PE=4 SV=1
Gene Ontology
ID GO:0008270
description zim17-type zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32414: 107268-108404 , PASA_asmbl_32415: 107282-108789
cDNA
(Sanger)
(ID:Location)		 015_M06.ab1: 107285-108171

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_090 0.0 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
2 Hb_005736_060 0.0609878775 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
3 Hb_159809_020 0.0641023129 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000926_300 0.0687699174 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
5 Hb_001235_190 0.0687737605 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
6 Hb_002963_010 0.0739514312 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
7 Hb_003599_040 0.0755992751 - - unnamed protein product [Vitis vinifera]
8 Hb_002477_140 0.0761306959 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
9 Hb_000009_460 0.0762521788 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004129_040 0.0783421377 - - PREDICTED: protein VACUOLELESS1 [Vitis vinifera]
11 Hb_002110_120 0.0785052788 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
12 Hb_015279_010 0.0786040616 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
13 Hb_002284_240 0.0788521917 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
14 Hb_000574_480 0.078927142 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
15 Hb_000007_100 0.0789289208 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
16 Hb_000334_210 0.0790795472 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
17 Hb_000340_140 0.0793953044 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
18 Hb_003126_080 0.0811878566 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
19 Hb_001616_040 0.0831317869 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
20 Hb_002713_070 0.0843401682 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]

Gene co-expression network

sample Hb_000307_090 Hb_000307_090 Hb_005736_060 Hb_005736_060 Hb_000307_090--Hb_005736_060 Hb_159809_020 Hb_159809_020 Hb_000307_090--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_000307_090--Hb_000926_300 Hb_001235_190 Hb_001235_190 Hb_000307_090--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_000307_090--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_000307_090--Hb_003599_040 Hb_005736_060--Hb_159809_020 Hb_001421_060 Hb_001421_060 Hb_005736_060--Hb_001421_060 Hb_004129_040 Hb_004129_040 Hb_005736_060--Hb_004129_040 Hb_001616_040 Hb_001616_040 Hb_005736_060--Hb_001616_040 Hb_005736_060--Hb_002963_010 Hb_159809_020--Hb_002963_010 Hb_159809_020--Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_159809_020--Hb_002284_240 Hb_000020_060 Hb_000020_060 Hb_159809_020--Hb_000020_060 Hb_010504_020 Hb_010504_020 Hb_159809_020--Hb_010504_020 Hb_000926_250 Hb_000926_250 Hb_159809_020--Hb_000926_250 Hb_000007_100 Hb_000007_100 Hb_000926_300--Hb_000007_100 Hb_128048_010 Hb_128048_010 Hb_000926_300--Hb_128048_010 Hb_000926_300--Hb_003599_040 Hb_012573_070 Hb_012573_070 Hb_000926_300--Hb_012573_070 Hb_000926_300--Hb_002284_240 Hb_008173_090 Hb_008173_090 Hb_001235_190--Hb_008173_090 Hb_001722_100 Hb_001722_100 Hb_001235_190--Hb_001722_100 Hb_001235_190--Hb_002963_010 Hb_004204_120 Hb_004204_120 Hb_001235_190--Hb_004204_120 Hb_002110_120 Hb_002110_120 Hb_001235_190--Hb_002110_120 Hb_000170_010 Hb_000170_010 Hb_002963_010--Hb_000170_010 Hb_000834_270 Hb_000834_270 Hb_002963_010--Hb_000834_270 Hb_004837_140 Hb_004837_140 Hb_002963_010--Hb_004837_140 Hb_000574_480 Hb_000574_480 Hb_002963_010--Hb_000574_480 Hb_002963_010--Hb_001722_100 Hb_003599_040--Hb_002284_240 Hb_002685_190 Hb_002685_190 Hb_003599_040--Hb_002685_190 Hb_000327_190 Hb_000327_190 Hb_003599_040--Hb_000327_190 Hb_003599_040--Hb_000007_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.4646 60.4063 37.6858 47.8188 67.6926 90.1658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
141.77 191.818 74.5399 56.7871 35.0531

CAGE analysis