Hb_000307_100

Information

Type -
Description -
Location Contig307: 111091-111597
Sequence    

Annotation

kegg
ID rcu:RCOM_1599580
description Plastocyanin A, chloroplast precursor, putative
nr
ID XP_002510603.1
description Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P17340
description Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1
trembl
ID B9R8G0
description Plastocyanin A, chloroplast, putative OS=Ricinus communis GN=RCOM_1599580 PE=4 SV=1
Gene Ontology
ID GO:0009535
description plastocyanin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32417: 110999-112385
cDNA
(Sanger)
(ID:Location)		 002_N20.ab1: 111031-111790 , 003_A01.ab1: 111031-111790 , 007_N10.ab1: 111019-111768 , 009_B24.ab1: 111031-111775 , 009_M13.ab1: 111031-111806 , 013_E14.ab1: 111031-111761 , 014_O18.ab1: 111031-111684 , 015_G20.ab1: 111063-111570 , 017_A01.ab1: 111041-111733 , 018_E12.ab1: 111031-111760 , 022_K17.ab1: 111019-111749 , 022_L12.ab1: 111031-111713 , 022_L18.ab1: 111027-111612 , 023_G13.ab1: 111019-111645 , 025_G17.ab1: 111031-111798 , 026_J16.ab1: 111044-111799 , 026_N18.ab1: 111031-111766 , 028_B17.ab1: 111031-111765 , 028_E20.ab1: 111058-111812 , 028_M11.ab1: 111031-111770 , 029_G06.ab1: 111031-111775 , 035_N23.ab1: 111031-111820 , 035_P12.ab1: 111031-111766 , 036_I21.ab1: 111031-111762 , 037_D09.ab1: 111031-111816 , 037_K17.ab1: 111031-111796 , 038_A14.ab1: 111019-111778 , 039_G05.ab1: 111031-111765 , 042_G04.ab1: 111031-111801 , 043_H20.ab1: 111019-111787 , 044_F06.ab1: 111489-111799 , 047_M12.ab1: 111031-111760 , 048_I18.ab1: 111031-111772 , 048_J17.ab1: 111031-111873 , 050_E08.ab1: 111031-111733 , 052_F14.ab1: 111031-111804

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_100 0.0 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
2 Hb_000098_040 0.0388418614 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
3 Hb_000329_430 0.0466831301 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]
4 Hb_002809_030 0.0484210074 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000352_230 0.0530867655 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_009771_090 0.0588254398 - - -
7 Hb_010697_020 0.0640775627 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003033_020 0.0670572202 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
9 Hb_000928_260 0.0679698173 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
10 Hb_006573_240 0.0705340063 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
11 Hb_001564_120 0.0731189138 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
12 Hb_001191_060 0.0741250063 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
13 Hb_002301_070 0.0750999401 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_014361_120 0.0756931035 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
15 Hb_001348_160 0.0768678058 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_000826_010 0.0780887811 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002534_090 0.0792607259 - - geranylgeranyl reductase [Hevea brasiliensis]
18 Hb_003787_030 0.0803091502 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002289_070 0.0812120846 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
20 Hb_002818_130 0.0826805244 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000307_100 Hb_000307_100 Hb_000098_040 Hb_000098_040 Hb_000307_100--Hb_000098_040 Hb_000329_430 Hb_000329_430 Hb_000307_100--Hb_000329_430 Hb_002809_030 Hb_002809_030 Hb_000307_100--Hb_002809_030 Hb_000352_230 Hb_000352_230 Hb_000307_100--Hb_000352_230 Hb_009771_090 Hb_009771_090 Hb_000307_100--Hb_009771_090 Hb_010697_020 Hb_010697_020 Hb_000307_100--Hb_010697_020 Hb_000098_040--Hb_000352_230 Hb_001564_120 Hb_001564_120 Hb_000098_040--Hb_001564_120 Hb_000098_040--Hb_000329_430 Hb_000098_040--Hb_009771_090 Hb_000098_040--Hb_002809_030 Hb_000329_430--Hb_009771_090 Hb_003925_120 Hb_003925_120 Hb_000329_430--Hb_003925_120 Hb_000826_010 Hb_000826_010 Hb_000329_430--Hb_000826_010 Hb_000329_430--Hb_000352_230 Hb_002809_030--Hb_000352_230 Hb_000320_370 Hb_000320_370 Hb_002809_030--Hb_000320_370 Hb_001348_160 Hb_001348_160 Hb_002809_030--Hb_001348_160 Hb_001191_060 Hb_001191_060 Hb_002809_030--Hb_001191_060 Hb_000352_230--Hb_009771_090 Hb_000545_180 Hb_000545_180 Hb_000352_230--Hb_000545_180 Hb_014361_120 Hb_014361_120 Hb_000352_230--Hb_014361_120 Hb_009771_090--Hb_000545_180 Hb_009771_090--Hb_014361_120 Hb_010697_020--Hb_001348_160 Hb_002301_070 Hb_002301_070 Hb_010697_020--Hb_002301_070 Hb_003787_030 Hb_003787_030 Hb_010697_020--Hb_003787_030 Hb_000928_260 Hb_000928_260 Hb_010697_020--Hb_000928_260 Hb_010697_020--Hb_001191_060 Hb_001269_480 Hb_001269_480 Hb_010697_020--Hb_001269_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0560785 124.094 1037.59 833.798 0 0.356966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.67348 1.95837 0.175108 9.1579 3372.54

CAGE analysis