Hb_000307_120

Information

Type -
Description -
Location Contig307: 120926-129780
Sequence    

Annotation

kegg
ID tcc:TCM_034304
description Major facilitator superfamily protein isoform 1
nr
ID KJB14354.1
description hypothetical protein B456_002G120900 [Gossypium raimondii]
swissprot
ID P70187
description Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3
trembl
ID A0A0D2Q4V2
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G120900 PE=4 SV=1
Gene Ontology
ID GO:0016021
description hippocampus abundant transcript-like protein 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32421: 124108-126612 , PASA_asmbl_32422: 126658-129816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_120 0.0 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
2 Hb_062785_010 0.1896821823 - - Organic cation transporter, putative [Ricinus communis]
3 Hb_005363_010 0.2265960428 - - hypothetical protein JCGZ_13835 [Jatropha curcas]
4 Hb_124996_010 0.2316937697 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
5 Hb_002094_070 0.2398105049 - - Organic cation transporter, putative [Ricinus communis]
6 Hb_118094_010 0.2436160547 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
7 Hb_000162_220 0.2457187537 - - nodulin family protein [Populus trichocarpa]
8 Hb_000504_110 0.2522665765 - - F-box/LRR-repeat protein, putative [Ricinus communis]
9 Hb_001507_030 0.2729853581 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
10 Hb_004899_310 0.2775623036 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003687_030 0.2792448616 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_004116_130 0.2800071858 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_000627_090 0.2867757765 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003442_100 0.2888965932 - - PREDICTED: uncharacterized protein LOC105650128 [Jatropha curcas]
15 Hb_003020_180 0.2904882866 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
16 Hb_001221_520 0.2915305581 - - conserved hypothetical protein [Ricinus communis]
17 Hb_015586_010 0.2930690716 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
18 Hb_000062_660 0.2961199032 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
19 Hb_001117_120 0.2980647893 - - chloride channel clc, putative [Ricinus communis]
20 Hb_005045_050 0.3027891569 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000307_120 Hb_000307_120 Hb_062785_010 Hb_062785_010 Hb_000307_120--Hb_062785_010 Hb_005363_010 Hb_005363_010 Hb_000307_120--Hb_005363_010 Hb_124996_010 Hb_124996_010 Hb_000307_120--Hb_124996_010 Hb_002094_070 Hb_002094_070 Hb_000307_120--Hb_002094_070 Hb_118094_010 Hb_118094_010 Hb_000307_120--Hb_118094_010 Hb_000162_220 Hb_000162_220 Hb_000307_120--Hb_000162_220 Hb_062785_010--Hb_002094_070 Hb_011724_030 Hb_011724_030 Hb_062785_010--Hb_011724_030 Hb_002217_520 Hb_002217_520 Hb_062785_010--Hb_002217_520 Hb_001117_120 Hb_001117_120 Hb_062785_010--Hb_001117_120 Hb_009986_010 Hb_009986_010 Hb_062785_010--Hb_009986_010 Hb_001221_520 Hb_001221_520 Hb_005363_010--Hb_001221_520 Hb_005363_010--Hb_118094_010 Hb_001507_030 Hb_001507_030 Hb_005363_010--Hb_001507_030 Hb_001999_240 Hb_001999_240 Hb_005363_010--Hb_001999_240 Hb_003020_180 Hb_003020_180 Hb_005363_010--Hb_003020_180 Hb_004899_310 Hb_004899_310 Hb_005363_010--Hb_004899_310 Hb_001288_030 Hb_001288_030 Hb_124996_010--Hb_001288_030 Hb_002157_040 Hb_002157_040 Hb_124996_010--Hb_002157_040 Hb_124996_010--Hb_000162_220 Hb_000007_200 Hb_000007_200 Hb_124996_010--Hb_000007_200 Hb_000072_210 Hb_000072_210 Hb_124996_010--Hb_000072_210 Hb_002094_070--Hb_011724_030 Hb_002094_070--Hb_002217_520 Hb_002094_070--Hb_001117_120 Hb_007218_160 Hb_007218_160 Hb_002094_070--Hb_007218_160 Hb_004158_100 Hb_004158_100 Hb_118094_010--Hb_004158_100 Hb_118094_010--Hb_001507_030 Hb_118094_010--Hb_001221_520 Hb_000318_080 Hb_000318_080 Hb_118094_010--Hb_000318_080 Hb_015586_010 Hb_015586_010 Hb_118094_010--Hb_015586_010 Hb_000407_070 Hb_000407_070 Hb_000162_220--Hb_000407_070 Hb_000390_140 Hb_000390_140 Hb_000162_220--Hb_000390_140 Hb_000023_290 Hb_000023_290 Hb_000162_220--Hb_000023_290 Hb_000362_180 Hb_000362_180 Hb_000162_220--Hb_000362_180 Hb_006117_060 Hb_006117_060 Hb_000162_220--Hb_006117_060 Hb_000162_220--Hb_000072_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.318048 5.26105 0.787577 7.41535 0.174648 0.0581562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.9804 1.69756 0.172953 1.67792 1.38771

CAGE analysis