Hb_000307_140

Information

Type -
Description -
Location Contig307: 174187-175287
Sequence    

Annotation

kegg
ID rcu:RCOM_1599550
description s-adenosyl-l-methionine:delta24-sterol-C-methyltransferase, putative (EC:2.1.1.143)
nr
ID XP_012073720.1
description PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
swissprot
ID Q39227
description 24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2
trembl
ID A0A067KKU8
description Methyltransferase OS=Jatropha curcas GN=JCGZ_08162 PE=3 SV=1
Gene Ontology
ID GO:0030797
description 24-methylenesterol c-methyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32424: 174117-175519
cDNA
(Sanger)
(ID:Location)		 003_B15.ab1: 174117-174866 , 028_P23.ab1: 174133-174677 , 040_E03.ab1: 174133-174884 , 047_A20.ab1: 174133-174884

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_140 0.0 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
2 Hb_000085_180 0.091954619 - - PREDICTED: syntaxin-52-like isoform X1 [Jatropha curcas]
3 Hb_005725_080 0.1122931253 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
4 Hb_002188_130 0.1168333218 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
5 Hb_002774_060 0.1183678117 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
6 Hb_001269_680 0.1185031548 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
7 Hb_000442_150 0.1190306554 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
8 Hb_007479_050 0.1219012621 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
9 Hb_000012_430 0.1240438462 - - calcineurin B, putative [Ricinus communis]
10 Hb_007778_030 0.1240625377 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_000976_160 0.124897276 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
12 Hb_007594_030 0.125431743 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
13 Hb_000031_060 0.1256831444 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
14 Hb_000618_040 0.1257049269 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
15 Hb_033843_010 0.1278015815 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
16 Hb_004324_310 0.1291535136 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000347_540 0.1307418389 - - protein binding protein, putative [Ricinus communis]
18 Hb_003893_030 0.1308768815 - - Protein yrdA, putative [Ricinus communis]
19 Hb_000220_130 0.1309831457 - - Phosphatidyl serine synthase family protein isoform 1 [Theobroma cacao]
20 Hb_005000_210 0.1325093962 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]

Gene co-expression network

sample Hb_000307_140 Hb_000307_140 Hb_000085_180 Hb_000085_180 Hb_000307_140--Hb_000085_180 Hb_005725_080 Hb_005725_080 Hb_000307_140--Hb_005725_080 Hb_002188_130 Hb_002188_130 Hb_000307_140--Hb_002188_130 Hb_002774_060 Hb_002774_060 Hb_000307_140--Hb_002774_060 Hb_001269_680 Hb_001269_680 Hb_000307_140--Hb_001269_680 Hb_000442_150 Hb_000442_150 Hb_000307_140--Hb_000442_150 Hb_001454_400 Hb_001454_400 Hb_000085_180--Hb_001454_400 Hb_003683_050 Hb_003683_050 Hb_000085_180--Hb_003683_050 Hb_000618_040 Hb_000618_040 Hb_000085_180--Hb_000618_040 Hb_033843_010 Hb_033843_010 Hb_000085_180--Hb_033843_010 Hb_004310_020 Hb_004310_020 Hb_000085_180--Hb_004310_020 Hb_000092_100 Hb_000092_100 Hb_000085_180--Hb_000092_100 Hb_005725_080--Hb_000442_150 Hb_000699_140 Hb_000699_140 Hb_005725_080--Hb_000699_140 Hb_008246_040 Hb_008246_040 Hb_005725_080--Hb_008246_040 Hb_001357_180 Hb_001357_180 Hb_005725_080--Hb_001357_180 Hb_000031_060 Hb_000031_060 Hb_005725_080--Hb_000031_060 Hb_005000_210 Hb_005000_210 Hb_002188_130--Hb_005000_210 Hb_002188_130--Hb_001269_680 Hb_005147_100 Hb_005147_100 Hb_002188_130--Hb_005147_100 Hb_000230_200 Hb_000230_200 Hb_002188_130--Hb_000230_200 Hb_004678_040 Hb_004678_040 Hb_002188_130--Hb_004678_040 Hb_000141_040 Hb_000141_040 Hb_002188_130--Hb_000141_040 Hb_000045_090 Hb_000045_090 Hb_002774_060--Hb_000045_090 Hb_000329_030 Hb_000329_030 Hb_002774_060--Hb_000329_030 Hb_000656_040 Hb_000656_040 Hb_002774_060--Hb_000656_040 Hb_004324_310 Hb_004324_310 Hb_002774_060--Hb_004324_310 Hb_010172_080 Hb_010172_080 Hb_002774_060--Hb_010172_080 Hb_032208_090 Hb_032208_090 Hb_002774_060--Hb_032208_090 Hb_007778_030 Hb_007778_030 Hb_001269_680--Hb_007778_030 Hb_005539_350 Hb_005539_350 Hb_001269_680--Hb_005539_350 Hb_002007_060 Hb_002007_060 Hb_001269_680--Hb_002007_060 Hb_003001_120 Hb_003001_120 Hb_001269_680--Hb_003001_120 Hb_001662_070 Hb_001662_070 Hb_001269_680--Hb_001662_070 Hb_001269_680--Hb_000230_200 Hb_000442_150--Hb_008246_040 Hb_002671_140 Hb_002671_140 Hb_000442_150--Hb_002671_140 Hb_000982_060 Hb_000982_060 Hb_000442_150--Hb_000982_060 Hb_057878_010 Hb_057878_010 Hb_000442_150--Hb_057878_010 Hb_001135_130 Hb_001135_130 Hb_000442_150--Hb_001135_130 Hb_003893_030 Hb_003893_030 Hb_000442_150--Hb_003893_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
147.974 55.4189 78.6844 122.862 81.9443 104.237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
167.812 86.4974 109.088 26.8665 26.7551

CAGE analysis