Hb_000307_160

Information

Type -
Description -
Location Contig307: 182691-183389
Sequence    

Annotation

kegg
ID rcu:RCOM_1599530
description hypothetical protein
nr
ID XP_012073722.1
description PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
swissprot
ID Q9SGS5
description Uncharacterized protein At1g76070 OS=Arabidopsis thaliana GN=At1g76070 PE=1 SV=1
trembl
ID A0A067KL66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08163 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_160 0.0 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
2 Hb_004162_150 0.0387449122 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
3 Hb_000485_050 0.0498819555 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
4 Hb_000107_240 0.0616826538 - - organic anion transporter, putative [Ricinus communis]
5 Hb_000868_020 0.0671652631 - - -
6 Hb_003925_010 0.0710605023 - - Polygalacturonase precursor, putative [Ricinus communis]
7 Hb_006249_010 0.071251642 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
8 Hb_027472_250 0.0745744326 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
9 Hb_000028_090 0.0748394469 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
10 Hb_001634_050 0.077303316 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
11 Hb_015183_090 0.0790033355 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
12 Hb_002073_210 0.0812562168 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009620_080 0.082356362 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
14 Hb_000115_210 0.0827402074 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
15 Hb_000429_070 0.0833737105 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
16 Hb_012180_070 0.0851230232 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000331_380 0.0876810942 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
18 Hb_010327_060 0.0879480579 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
19 Hb_001401_130 0.0889340672 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
20 Hb_006570_170 0.0930987575 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000307_160 Hb_000307_160 Hb_004162_150 Hb_004162_150 Hb_000307_160--Hb_004162_150 Hb_000485_050 Hb_000485_050 Hb_000307_160--Hb_000485_050 Hb_000107_240 Hb_000107_240 Hb_000307_160--Hb_000107_240 Hb_000868_020 Hb_000868_020 Hb_000307_160--Hb_000868_020 Hb_003925_010 Hb_003925_010 Hb_000307_160--Hb_003925_010 Hb_006249_010 Hb_006249_010 Hb_000307_160--Hb_006249_010 Hb_004162_150--Hb_000485_050 Hb_004162_150--Hb_003925_010 Hb_015183_090 Hb_015183_090 Hb_004162_150--Hb_015183_090 Hb_000431_050 Hb_000431_050 Hb_004162_150--Hb_000431_050 Hb_000115_210 Hb_000115_210 Hb_004162_150--Hb_000115_210 Hb_027472_250 Hb_027472_250 Hb_000485_050--Hb_027472_250 Hb_000485_050--Hb_003925_010 Hb_009620_080 Hb_009620_080 Hb_000485_050--Hb_009620_080 Hb_000028_090 Hb_000028_090 Hb_000485_050--Hb_000028_090 Hb_001634_050 Hb_001634_050 Hb_000107_240--Hb_001634_050 Hb_000107_240--Hb_006249_010 Hb_000107_240--Hb_000868_020 Hb_012180_070 Hb_012180_070 Hb_000107_240--Hb_012180_070 Hb_001401_130 Hb_001401_130 Hb_000107_240--Hb_001401_130 Hb_010327_060 Hb_010327_060 Hb_000868_020--Hb_010327_060 Hb_000868_020--Hb_000028_090 Hb_002757_040 Hb_002757_040 Hb_000868_020--Hb_002757_040 Hb_000868_020--Hb_006249_010 Hb_000637_090 Hb_000637_090 Hb_003925_010--Hb_000637_090 Hb_003925_010--Hb_027472_250 Hb_007677_010 Hb_007677_010 Hb_003925_010--Hb_007677_010 Hb_000429_070 Hb_000429_070 Hb_003925_010--Hb_000429_070 Hb_006249_010--Hb_001634_050 Hb_000318_500 Hb_000318_500 Hb_006249_010--Hb_000318_500 Hb_006570_170 Hb_006570_170 Hb_006249_010--Hb_006570_170 Hb_103468_010 Hb_103468_010 Hb_006249_010--Hb_103468_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0563531 1.57422 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.12602

CAGE analysis