Hb_000307_170

Information

Type -
Description -
Location Contig307: 184664-186328
Sequence    

Annotation

kegg
ID rcu:RCOM_0068030
description hypothetical protein
nr
ID XP_012077740.1
description PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13091 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32428: 184667-185367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_170 0.0 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
2 Hb_004032_060 0.0782175306 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
3 Hb_004032_050 0.0787128946 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
4 Hb_002276_190 0.1042365436 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
5 Hb_009801_010 0.1046422255 - - ATPase inhibitor, putative [Ricinus communis]
6 Hb_006261_040 0.1063014558 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
7 Hb_006501_150 0.1099548879 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003126_040 0.114032573 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000976_270 0.1195708272 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
10 Hb_000042_210 0.1220365058 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
11 Hb_005015_010 0.1230417324 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
12 Hb_004525_100 0.1240822887 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
13 Hb_004046_040 0.1256165279 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
14 Hb_003605_070 0.1267782683 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
15 Hb_179511_010 0.1268597406 - - -
16 Hb_143766_090 0.1269003356 - - 60S ribosomal protein L31B [Hevea brasiliensis]
17 Hb_004447_030 0.1273878237 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
18 Hb_000172_120 0.1277744308 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
19 Hb_000768_030 0.1278448329 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
20 Hb_001663_110 0.1287185888 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000307_170 Hb_000307_170 Hb_004032_060 Hb_004032_060 Hb_000307_170--Hb_004032_060 Hb_004032_050 Hb_004032_050 Hb_000307_170--Hb_004032_050 Hb_002276_190 Hb_002276_190 Hb_000307_170--Hb_002276_190 Hb_009801_010 Hb_009801_010 Hb_000307_170--Hb_009801_010 Hb_006261_040 Hb_006261_040 Hb_000307_170--Hb_006261_040 Hb_006501_150 Hb_006501_150 Hb_000307_170--Hb_006501_150 Hb_001951_260 Hb_001951_260 Hb_004032_060--Hb_001951_260 Hb_000482_110 Hb_000482_110 Hb_004032_060--Hb_000482_110 Hb_004032_060--Hb_004032_050 Hb_000290_020 Hb_000290_020 Hb_004032_060--Hb_000290_020 Hb_025236_040 Hb_025236_040 Hb_004032_060--Hb_025236_040 Hb_004032_050--Hb_002276_190 Hb_001623_580 Hb_001623_580 Hb_004032_050--Hb_001623_580 Hb_000175_490 Hb_000175_490 Hb_004032_050--Hb_000175_490 Hb_000768_030 Hb_000768_030 Hb_004032_050--Hb_000768_030 Hb_003605_070 Hb_003605_070 Hb_004032_050--Hb_003605_070 Hb_002276_190--Hb_003605_070 Hb_002276_190--Hb_001623_580 Hb_002276_190--Hb_000175_490 Hb_005288_160 Hb_005288_160 Hb_002276_190--Hb_005288_160 Hb_002276_190--Hb_000768_030 Hb_001956_120 Hb_001956_120 Hb_009801_010--Hb_001956_120 Hb_005015_010 Hb_005015_010 Hb_009801_010--Hb_005015_010 Hb_000392_280 Hb_000392_280 Hb_009801_010--Hb_000392_280 Hb_000976_270 Hb_000976_270 Hb_009801_010--Hb_000976_270 Hb_003581_110 Hb_003581_110 Hb_009801_010--Hb_003581_110 Hb_017098_030 Hb_017098_030 Hb_006261_040--Hb_017098_030 Hb_000345_560 Hb_000345_560 Hb_006261_040--Hb_000345_560 Hb_012675_090 Hb_012675_090 Hb_006261_040--Hb_012675_090 Hb_004502_030 Hb_004502_030 Hb_006261_040--Hb_004502_030 Hb_033080_010 Hb_033080_010 Hb_006261_040--Hb_033080_010 Hb_001437_300 Hb_001437_300 Hb_006261_040--Hb_001437_300 Hb_143766_090 Hb_143766_090 Hb_006501_150--Hb_143766_090 Hb_001514_020 Hb_001514_020 Hb_006501_150--Hb_001514_020 Hb_005333_040 Hb_005333_040 Hb_006501_150--Hb_005333_040 Hb_006501_150--Hb_004502_030 Hb_006501_150--Hb_033080_010 Hb_000183_070 Hb_000183_070 Hb_006501_150--Hb_000183_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.6815 8.88568 26.8484 7.59733 91.8727 53.7444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.1876 42.8433 11.6774 10.3254 4.17099

CAGE analysis