Hb_000307_230

Information

Type -
Description -
Location Contig307: 232931-233842
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_230 0.0 - - -
2 Hb_002599_040 0.1775716598 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
3 Hb_000764_040 0.2061653696 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
4 Hb_106815_010 0.2139930989 - - hypothetical protein, conserved [Eimeria acervulina]
5 Hb_000614_270 0.2272149707 - - -
6 Hb_010883_130 0.2363450795 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
7 Hb_115376_010 0.2460480065 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
8 Hb_043792_020 0.2470809244 - - Retrotransposon gag protein [Medicago truncatula]
9 Hb_002869_070 0.251388374 - - -
10 Hb_154997_010 0.2514818178 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
11 Hb_159938_010 0.2526837115 - - phosphoprotein phosphatase, putative [Ricinus communis]
12 Hb_001519_210 0.2549953172 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
13 Hb_050334_010 0.2614038128 - - -
14 Hb_000060_060 0.26373794 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22940 [Jatropha curcas]
15 Hb_006933_010 0.2712764719 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_002473_140 0.2713411754 - - -
17 Hb_005803_040 0.2773226173 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
18 Hb_001450_010 0.2859961551 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
19 Hb_002360_020 0.2883558236 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_008730_010 0.2883592235 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000307_230 Hb_000307_230 Hb_002599_040 Hb_002599_040 Hb_000307_230--Hb_002599_040 Hb_000764_040 Hb_000764_040 Hb_000307_230--Hb_000764_040 Hb_106815_010 Hb_106815_010 Hb_000307_230--Hb_106815_010 Hb_000614_270 Hb_000614_270 Hb_000307_230--Hb_000614_270 Hb_010883_130 Hb_010883_130 Hb_000307_230--Hb_010883_130 Hb_115376_010 Hb_115376_010 Hb_000307_230--Hb_115376_010 Hb_000060_060 Hb_000060_060 Hb_002599_040--Hb_000060_060 Hb_008730_010 Hb_008730_010 Hb_002599_040--Hb_008730_010 Hb_002599_040--Hb_106815_010 Hb_008326_010 Hb_008326_010 Hb_002599_040--Hb_008326_010 Hb_002599_040--Hb_000614_270 Hb_000764_040--Hb_010883_130 Hb_155556_010 Hb_155556_010 Hb_000764_040--Hb_155556_010 Hb_005803_040 Hb_005803_040 Hb_000764_040--Hb_005803_040 Hb_001519_210 Hb_001519_210 Hb_000764_040--Hb_001519_210 Hb_012071_010 Hb_012071_010 Hb_000764_040--Hb_012071_010 Hb_002869_070 Hb_002869_070 Hb_106815_010--Hb_002869_070 Hb_004124_010 Hb_004124_010 Hb_106815_010--Hb_004124_010 Hb_006933_010 Hb_006933_010 Hb_106815_010--Hb_006933_010 Hb_006157_050 Hb_006157_050 Hb_106815_010--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_106815_010--Hb_065943_010 Hb_099723_010 Hb_099723_010 Hb_106815_010--Hb_099723_010 Hb_000614_270--Hb_000060_060 Hb_003746_020 Hb_003746_020 Hb_000614_270--Hb_003746_020 Hb_104735_010 Hb_104735_010 Hb_000614_270--Hb_104735_010 Hb_002482_050 Hb_002482_050 Hb_000614_270--Hb_002482_050 Hb_143004_010 Hb_143004_010 Hb_000614_270--Hb_143004_010 Hb_062192_060 Hb_062192_060 Hb_000614_270--Hb_062192_060 Hb_010883_130--Hb_005803_040 Hb_082987_010 Hb_082987_010 Hb_010883_130--Hb_082987_010 Hb_012295_020 Hb_012295_020 Hb_010883_130--Hb_012295_020 Hb_010883_130--Hb_012071_010 Hb_001062_020 Hb_001062_020 Hb_115376_010--Hb_001062_020 Hb_007790_040 Hb_007790_040 Hb_115376_010--Hb_007790_040 Hb_115376_010--Hb_008326_010 Hb_002791_020 Hb_002791_020 Hb_115376_010--Hb_002791_020 Hb_115376_010--Hb_002599_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0898062 0.155044 0.11108 0.5141

CAGE analysis