Hb_000307_250

Information

Type -
Description -
Location Contig307: 259769-263696
Sequence    

Annotation

kegg
ID rcu:RCOM_1599380
description nucleoredoxin, putative
nr
ID XP_012073729.1
description PREDICTED: probable nucleoredoxin 2 [Jatropha curcas]
swissprot
ID Q0JIL1
description Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1
trembl
ID A0A067KPE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08169 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable nucleoredoxin 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32436: 259785-263648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_250 0.0 - - PREDICTED: probable nucleoredoxin 2 [Jatropha curcas]
2 Hb_007348_030 0.123909799 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
3 Hb_001158_180 0.1309015215 - - -
4 Hb_007680_020 0.1483823723 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
5 Hb_000441_160 0.1485536179 - - ARF GTPase activator, putative [Ricinus communis]
6 Hb_000244_240 0.1505145261 - - ATP binding protein, putative [Ricinus communis]
7 Hb_002986_050 0.1520484518 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
8 Hb_010189_010 0.1559469549 - - -
9 Hb_012760_200 0.157266243 - - protein phsophatase-2a, putative [Ricinus communis]
10 Hb_013753_010 0.1591817551 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
11 Hb_000174_200 0.1627643304 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
12 Hb_000792_110 0.1644372674 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
13 Hb_000640_210 0.1644574043 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
14 Hb_005028_010 0.1648471115 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
15 Hb_005000_270 0.1649494553 - - unnamed protein product [Vitis vinifera]
16 Hb_000365_060 0.1651672978 - - 5'->3' exoribonuclease, putative [Ricinus communis]
17 Hb_002918_070 0.1652157551 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
18 Hb_005399_020 0.16540322 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
19 Hb_001247_140 0.1655676504 - - -
20 Hb_003216_110 0.1661054103 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000307_250 Hb_000307_250 Hb_007348_030 Hb_007348_030 Hb_000307_250--Hb_007348_030 Hb_001158_180 Hb_001158_180 Hb_000307_250--Hb_001158_180 Hb_007680_020 Hb_007680_020 Hb_000307_250--Hb_007680_020 Hb_000441_160 Hb_000441_160 Hb_000307_250--Hb_000441_160 Hb_000244_240 Hb_000244_240 Hb_000307_250--Hb_000244_240 Hb_002986_050 Hb_002986_050 Hb_000307_250--Hb_002986_050 Hb_007348_030--Hb_000244_240 Hb_101151_020 Hb_101151_020 Hb_007348_030--Hb_101151_020 Hb_000365_060 Hb_000365_060 Hb_007348_030--Hb_000365_060 Hb_000120_510 Hb_000120_510 Hb_007348_030--Hb_000120_510 Hb_001278_060 Hb_001278_060 Hb_007348_030--Hb_001278_060 Hb_001301_210 Hb_001301_210 Hb_007348_030--Hb_001301_210 Hb_001247_140 Hb_001247_140 Hb_001158_180--Hb_001247_140 Hb_089435_010 Hb_089435_010 Hb_001158_180--Hb_089435_010 Hb_001158_180--Hb_007348_030 Hb_001158_180--Hb_000441_160 Hb_001158_180--Hb_007680_020 Hb_006615_100 Hb_006615_100 Hb_007680_020--Hb_006615_100 Hb_005122_060 Hb_005122_060 Hb_007680_020--Hb_005122_060 Hb_001195_150 Hb_001195_150 Hb_007680_020--Hb_001195_150 Hb_007257_050 Hb_007257_050 Hb_007680_020--Hb_007257_050 Hb_000281_010 Hb_000281_010 Hb_007680_020--Hb_000281_010 Hb_002159_040 Hb_002159_040 Hb_000441_160--Hb_002159_040 Hb_011497_010 Hb_011497_010 Hb_000441_160--Hb_011497_010 Hb_000441_160--Hb_000244_240 Hb_005000_270 Hb_005000_270 Hb_000441_160--Hb_005000_270 Hb_003716_020 Hb_003716_020 Hb_000441_160--Hb_003716_020 Hb_000441_160--Hb_007348_030 Hb_000244_240--Hb_002159_040 Hb_000244_240--Hb_001301_210 Hb_046615_020 Hb_046615_020 Hb_000244_240--Hb_046615_020 Hb_000244_240--Hb_000120_510 Hb_000230_370 Hb_000230_370 Hb_000244_240--Hb_000230_370 Hb_002475_050 Hb_002475_050 Hb_002986_050--Hb_002475_050 Hb_000212_280 Hb_000212_280 Hb_002986_050--Hb_000212_280 Hb_000732_020 Hb_000732_020 Hb_002986_050--Hb_000732_020 Hb_000372_040 Hb_000372_040 Hb_002986_050--Hb_000372_040 Hb_002986_050--Hb_005000_270 Hb_003216_110 Hb_003216_110 Hb_002986_050--Hb_003216_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.612 65.4583 12.2778 16.6375 64.2141 179.995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.7499 8.53746 28.8885 9.81128 11.471

CAGE analysis