Hb_000309_110

Information

Type -
Description -
Location Contig309: 146804-150706
Sequence    

Annotation

kegg
ID tcc:TCM_016881
description Tetratricopeptide repeat-like superfamily protein
nr
ID XP_012081574.1
description PREDICTED: kinesin light chain [Jatropha curcas]
swissprot
ID Q7Z494
description Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1
trembl
ID A0A067LA63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09595 PE=4 SV=1
Gene Ontology
ID GO:0005886
description kinesin light chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32622: 147082-147288 , PASA_asmbl_32623: 149194-150912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000309_110 0.0 - - PREDICTED: kinesin light chain [Jatropha curcas]
2 Hb_002559_030 0.1643398778 - - oxidoreductase, putative [Ricinus communis]
3 Hb_005375_110 0.1676965698 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
4 Hb_002010_110 0.1687194549 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
5 Hb_001221_400 0.1741697596 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
6 Hb_000521_090 0.1823331077 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
7 Hb_007933_030 0.1864445891 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
8 Hb_000417_170 0.1877032069 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
9 Hb_001140_170 0.1960290231 - - PREDICTED: remorin [Jatropha curcas]
10 Hb_030959_010 0.1992061166 - - cullin, putative [Ricinus communis]
11 Hb_009252_010 0.2017033235 - - PREDICTED: kinesin light chain [Jatropha curcas]
12 Hb_000117_030 0.2047954626 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
13 Hb_003494_130 0.2053857388 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
14 Hb_020400_020 0.2080949879 - - starch synthase isoform II [Manihot esculenta]
15 Hb_003053_050 0.2104700054 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
16 Hb_002681_080 0.2109548667 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
17 Hb_005116_140 0.2112546658 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
18 Hb_004097_090 0.211955854 - - PREDICTED: uncharacterized protein LOC105634517 [Jatropha curcas]
19 Hb_002596_080 0.2122030429 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
20 Hb_003006_090 0.2134642986 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000309_110 Hb_000309_110 Hb_002559_030 Hb_002559_030 Hb_000309_110--Hb_002559_030 Hb_005375_110 Hb_005375_110 Hb_000309_110--Hb_005375_110 Hb_002010_110 Hb_002010_110 Hb_000309_110--Hb_002010_110 Hb_001221_400 Hb_001221_400 Hb_000309_110--Hb_001221_400 Hb_000521_090 Hb_000521_090 Hb_000309_110--Hb_000521_090 Hb_007933_030 Hb_007933_030 Hb_000309_110--Hb_007933_030 Hb_014361_090 Hb_014361_090 Hb_002559_030--Hb_014361_090 Hb_003006_090 Hb_003006_090 Hb_002559_030--Hb_003006_090 Hb_011828_010 Hb_011828_010 Hb_002559_030--Hb_011828_010 Hb_000056_110 Hb_000056_110 Hb_002559_030--Hb_000056_110 Hb_000071_160 Hb_000071_160 Hb_002559_030--Hb_000071_160 Hb_002685_220 Hb_002685_220 Hb_002559_030--Hb_002685_220 Hb_004735_020 Hb_004735_020 Hb_005375_110--Hb_004735_020 Hb_000120_860 Hb_000120_860 Hb_005375_110--Hb_000120_860 Hb_030959_010 Hb_030959_010 Hb_005375_110--Hb_030959_010 Hb_005375_110--Hb_000521_090 Hb_002681_080 Hb_002681_080 Hb_005375_110--Hb_002681_080 Hb_000056_090 Hb_000056_090 Hb_005375_110--Hb_000056_090 Hb_002010_110--Hb_001221_400 Hb_003494_130 Hb_003494_130 Hb_002010_110--Hb_003494_130 Hb_020400_020 Hb_020400_020 Hb_002010_110--Hb_020400_020 Hb_012799_190 Hb_012799_190 Hb_002010_110--Hb_012799_190 Hb_001579_150 Hb_001579_150 Hb_002010_110--Hb_001579_150 Hb_000762_110 Hb_000762_110 Hb_002010_110--Hb_000762_110 Hb_000140_060 Hb_000140_060 Hb_001221_400--Hb_000140_060 Hb_002811_050 Hb_002811_050 Hb_001221_400--Hb_002811_050 Hb_001221_400--Hb_012799_190 Hb_001221_400--Hb_000056_110 Hb_001221_400--Hb_003006_090 Hb_000117_030 Hb_000117_030 Hb_000521_090--Hb_000117_030 Hb_000521_090--Hb_002681_080 Hb_000521_090--Hb_004735_020 Hb_000521_090--Hb_007933_030 Hb_000062_400 Hb_000062_400 Hb_000521_090--Hb_000062_400 Hb_001195_370 Hb_001195_370 Hb_007933_030--Hb_001195_370 Hb_001080_150 Hb_001080_150 Hb_007933_030--Hb_001080_150 Hb_001793_030 Hb_001793_030 Hb_007933_030--Hb_001793_030 Hb_000300_680 Hb_000300_680 Hb_007933_030--Hb_000300_680 Hb_007933_030--Hb_020400_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2611 12.0353 2.99564 22.9787 2.01193 5.87228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85893 1.75444 2.75029 1.50032 37.6397

CAGE analysis