Hb_000310_050

Information

Type transcription factor
Description TF Family: WRKY
Location Contig310: 66719-68387
Sequence    

Annotation

kegg
ID rcu:RCOM_0251190
description WRKY transcription factor, putative
nr
ID XP_002529783.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID O04336
description Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1
trembl
ID B9SUX2
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0251190 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable wrky transcription factor 17 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000310_050 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_006573_120 0.0496075526 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
3 Hb_000336_120 0.0596091808 - - PREDICTED: mavicyanin [Populus euphratica]
4 Hb_015175_070 0.0626223315 - - cysteine protease, putative [Ricinus communis]
5 Hb_012114_090 0.0715125097 - - tubulin beta chain, putative [Ricinus communis]
6 Hb_001349_040 0.0718595951 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
7 Hb_000699_220 0.0729257086 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
8 Hb_002092_060 0.0770162937 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006717_060 0.0823668212 - - PREDICTED: peroxidase 42 [Jatropha curcas]
10 Hb_002686_220 0.0827105623 - - PREDICTED: expansin-A15-like [Jatropha curcas]
11 Hb_005295_030 0.083442585 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
12 Hb_000227_290 0.0841780959 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
13 Hb_002309_020 0.0871735858 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
14 Hb_000497_030 0.0937337306 - - -
15 Hb_009079_010 0.0946750707 - - JHL18I08.8 [Jatropha curcas]
16 Hb_009158_010 0.0950696372 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
17 Hb_112950_010 0.0957300732 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
18 Hb_001369_480 0.0969377525 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
19 Hb_000083_200 0.0982796792 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006153_140 0.1021667724 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000310_050 Hb_000310_050 Hb_006573_120 Hb_006573_120 Hb_000310_050--Hb_006573_120 Hb_000336_120 Hb_000336_120 Hb_000310_050--Hb_000336_120 Hb_015175_070 Hb_015175_070 Hb_000310_050--Hb_015175_070 Hb_012114_090 Hb_012114_090 Hb_000310_050--Hb_012114_090 Hb_001349_040 Hb_001349_040 Hb_000310_050--Hb_001349_040 Hb_000699_220 Hb_000699_220 Hb_000310_050--Hb_000699_220 Hb_009158_010 Hb_009158_010 Hb_006573_120--Hb_009158_010 Hb_112950_010 Hb_112950_010 Hb_006573_120--Hb_112950_010 Hb_118934_010 Hb_118934_010 Hb_006573_120--Hb_118934_010 Hb_006573_120--Hb_001349_040 Hb_002686_220 Hb_002686_220 Hb_006573_120--Hb_002686_220 Hb_000336_120--Hb_012114_090 Hb_000336_120--Hb_015175_070 Hb_000336_120--Hb_000699_220 Hb_001369_480 Hb_001369_480 Hb_000336_120--Hb_001369_480 Hb_006717_060 Hb_006717_060 Hb_000336_120--Hb_006717_060 Hb_002092_060 Hb_002092_060 Hb_015175_070--Hb_002092_060 Hb_002309_020 Hb_002309_020 Hb_015175_070--Hb_002309_020 Hb_005295_030 Hb_005295_030 Hb_015175_070--Hb_005295_030 Hb_015175_070--Hb_001349_040 Hb_012114_090--Hb_000699_220 Hb_012114_090--Hb_001369_480 Hb_012114_090--Hb_006717_060 Hb_001456_030 Hb_001456_030 Hb_012114_090--Hb_001456_030 Hb_000083_200 Hb_000083_200 Hb_001349_040--Hb_000083_200 Hb_001349_040--Hb_000699_220 Hb_001349_040--Hb_112950_010 Hb_000497_030 Hb_000497_030 Hb_001349_040--Hb_000497_030 Hb_001349_040--Hb_006717_060 Hb_000699_220--Hb_006717_060 Hb_000699_220--Hb_000497_030 Hb_005616_020 Hb_005616_020 Hb_000699_220--Hb_005616_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0835747 0.486906 3.04406 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.66957

CAGE analysis