Hb_000310_060

Information

Type -
Description -
Location Contig310: 70046-74877
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00340g
description hypothetical protein
nr
ID KDP25637.1
description hypothetical protein JCGZ_20793 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JP15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20793 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32814: 73012-74958 , PASA_asmbl_32815: 70253-73454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000310_060 0.0 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
2 Hb_000270_280 0.0729822352 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
3 Hb_003398_040 0.0791147447 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
4 Hb_001587_040 0.0879256111 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
5 Hb_000940_030 0.0898063984 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
6 Hb_000327_200 0.0909933952 - - glutathione-s-transferase omega, putative [Ricinus communis]
7 Hb_005527_060 0.0919668624 - - malic enzyme, putative [Ricinus communis]
8 Hb_000996_080 0.0970946891 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
9 Hb_002641_120 0.0972288179 - - PREDICTED: calmodulin [Jatropha curcas]
10 Hb_000753_110 0.1000520696 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
11 Hb_000011_560 0.1055372599 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
12 Hb_010868_040 0.1133873064 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
13 Hb_010632_020 0.114612851 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
14 Hb_000307_070 0.1173061609 - - protein kinase, putative [Ricinus communis]
15 Hb_000334_050 0.1202459685 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
16 Hb_003050_360 0.1209609366 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
17 Hb_003680_090 0.12118702 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
18 Hb_112064_010 0.1227330205 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
19 Hb_000009_420 0.1244472657 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
20 Hb_001863_180 0.1273925215 - - PREDICTED: serine/threonine-protein kinase SAPK2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000310_060 Hb_000310_060 Hb_000270_280 Hb_000270_280 Hb_000310_060--Hb_000270_280 Hb_003398_040 Hb_003398_040 Hb_000310_060--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_000310_060--Hb_001587_040 Hb_000940_030 Hb_000940_030 Hb_000310_060--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000310_060--Hb_000327_200 Hb_005527_060 Hb_005527_060 Hb_000310_060--Hb_005527_060 Hb_003680_090 Hb_003680_090 Hb_000270_280--Hb_003680_090 Hb_000270_280--Hb_000940_030 Hb_004648_030 Hb_004648_030 Hb_000270_280--Hb_004648_030 Hb_004162_270 Hb_004162_270 Hb_000270_280--Hb_004162_270 Hb_005784_030 Hb_005784_030 Hb_000270_280--Hb_005784_030 Hb_000009_420 Hb_000009_420 Hb_003398_040--Hb_000009_420 Hb_003398_040--Hb_001587_040 Hb_003398_040--Hb_005527_060 Hb_010868_040 Hb_010868_040 Hb_003398_040--Hb_010868_040 Hb_000753_110 Hb_000753_110 Hb_003398_040--Hb_000753_110 Hb_001587_040--Hb_005527_060 Hb_000996_080 Hb_000996_080 Hb_001587_040--Hb_000996_080 Hb_000307_070 Hb_000307_070 Hb_001587_040--Hb_000307_070 Hb_001390_100 Hb_001390_100 Hb_001587_040--Hb_001390_100 Hb_000940_030--Hb_010868_040 Hb_003055_070 Hb_003055_070 Hb_000940_030--Hb_003055_070 Hb_000940_030--Hb_000996_080 Hb_001365_030 Hb_001365_030 Hb_000940_030--Hb_001365_030 Hb_000069_360 Hb_000069_360 Hb_000327_200--Hb_000069_360 Hb_000327_200--Hb_000996_080 Hb_003020_250 Hb_003020_250 Hb_000327_200--Hb_003020_250 Hb_000327_200--Hb_001587_040 Hb_000334_050 Hb_000334_050 Hb_000327_200--Hb_000334_050 Hb_002432_050 Hb_002432_050 Hb_005527_060--Hb_002432_050 Hb_000589_170 Hb_000589_170 Hb_005527_060--Hb_000589_170 Hb_000011_560 Hb_000011_560 Hb_005527_060--Hb_000011_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36754 7.6121 30.8302 14.4855 1.04841 0.773514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.18556 3.52979 2.54987 9.43439 21.5996

CAGE analysis