Hb_000310_080

Information

Type -
Description -
Location Contig310: 121782-131968
Sequence    

Annotation

kegg
ID eus:EUTSA_v10023249mg
description hypothetical protein
nr
ID XP_006391851.1
description hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
swissprot
ID Q9SXD5
description Flavin-containing monooxygenase FMO GS-OX-like 3 OS=Arabidopsis thaliana GN=At1g62620 PE=2 SV=2
trembl
ID V4KH20
description Flavin-containing monooxygenase OS=Eutrema salsugineum GN=EUTSA_v10023249mg PE=3 SV=1
Gene Ontology
ID GO:0004499
description flavin-containing monooxygenase fmo gs-ox-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32818: 128934-131941 , PASA_asmbl_32819: 130538-131941 , PASA_asmbl_32820: 130586-131682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000310_080 0.0 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
2 Hb_003020_110 0.077352992 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
3 Hb_027405_020 0.0839635218 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
4 Hb_000029_160 0.0901188433 - - Nitrilase, putative [Ricinus communis]
5 Hb_010128_090 0.094580658 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
6 Hb_000032_320 0.0975844049 - - protein binding protein, putative [Ricinus communis]
7 Hb_000373_270 0.0991937842 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
8 Hb_031042_070 0.0994786448 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001226_180 0.1011886529 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
10 Hb_000342_110 0.1019539272 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
11 Hb_003656_160 0.1038813581 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
12 Hb_002960_060 0.1049209797 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
13 Hb_000100_070 0.1066074597 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
14 Hb_003058_110 0.1074342238 - - PREDICTED: alpha-mannosidase isoform X2 [Populus euphratica]
15 Hb_000879_140 0.1075587145 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
16 Hb_005147_110 0.1079741123 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
17 Hb_001486_080 0.1083235654 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
18 Hb_002301_220 0.1101327288 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
19 Hb_001366_040 0.1103535972 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
20 Hb_000343_210 0.1105176141 - - ran-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000310_080 Hb_000310_080 Hb_003020_110 Hb_003020_110 Hb_000310_080--Hb_003020_110 Hb_027405_020 Hb_027405_020 Hb_000310_080--Hb_027405_020 Hb_000029_160 Hb_000029_160 Hb_000310_080--Hb_000029_160 Hb_010128_090 Hb_010128_090 Hb_000310_080--Hb_010128_090 Hb_000032_320 Hb_000032_320 Hb_000310_080--Hb_000032_320 Hb_000373_270 Hb_000373_270 Hb_000310_080--Hb_000373_270 Hb_000343_210 Hb_000343_210 Hb_003020_110--Hb_000343_210 Hb_164010_060 Hb_164010_060 Hb_003020_110--Hb_164010_060 Hb_000342_110 Hb_000342_110 Hb_003020_110--Hb_000342_110 Hb_003581_120 Hb_003581_120 Hb_003020_110--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_003020_110--Hb_002400_180 Hb_031042_070 Hb_031042_070 Hb_003020_110--Hb_031042_070 Hb_003125_060 Hb_003125_060 Hb_027405_020--Hb_003125_060 Hb_027405_020--Hb_003020_110 Hb_027405_020--Hb_000029_160 Hb_000172_550 Hb_000172_550 Hb_027405_020--Hb_000172_550 Hb_023020_060 Hb_023020_060 Hb_027405_020--Hb_023020_060 Hb_002960_060 Hb_002960_060 Hb_000029_160--Hb_002960_060 Hb_000029_160--Hb_000172_550 Hb_001975_070 Hb_001975_070 Hb_000029_160--Hb_001975_070 Hb_002078_420 Hb_002078_420 Hb_000029_160--Hb_002078_420 Hb_001157_180 Hb_001157_180 Hb_010128_090--Hb_001157_180 Hb_000665_030 Hb_000665_030 Hb_010128_090--Hb_000665_030 Hb_017075_030 Hb_017075_030 Hb_010128_090--Hb_017075_030 Hb_003878_140 Hb_003878_140 Hb_010128_090--Hb_003878_140 Hb_004920_130 Hb_004920_130 Hb_010128_090--Hb_004920_130 Hb_156850_030 Hb_156850_030 Hb_000032_320--Hb_156850_030 Hb_001728_100 Hb_001728_100 Hb_000032_320--Hb_001728_100 Hb_002301_220 Hb_002301_220 Hb_000032_320--Hb_002301_220 Hb_001541_020 Hb_001541_020 Hb_000032_320--Hb_001541_020 Hb_022408_010 Hb_022408_010 Hb_000032_320--Hb_022408_010 Hb_006586_050 Hb_006586_050 Hb_000032_320--Hb_006586_050 Hb_001341_030 Hb_001341_030 Hb_000373_270--Hb_001341_030 Hb_005147_110 Hb_005147_110 Hb_000373_270--Hb_005147_110 Hb_000300_280 Hb_000300_280 Hb_000373_270--Hb_000300_280 Hb_004310_060 Hb_004310_060 Hb_000373_270--Hb_004310_060 Hb_000186_280 Hb_000186_280 Hb_000373_270--Hb_000186_280 Hb_000879_140 Hb_000879_140 Hb_000373_270--Hb_000879_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.1803 14.3511 5.16811 4.83907 21.05 16.6961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7748 7.6266 11.0419 11.5409 3.60994

CAGE analysis