Hb_000310_110

Information

Type -
Description -
Location Contig310: 153684-158954
Sequence    

Annotation

kegg
ID rcu:RCOM_0196180
description trehalose-6-phosphate synthase, putative (EC:3.1.3.12)
nr
ID XP_012087137.1
description PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
swissprot
ID Q9SUW0
description Probable trehalose-phosphate phosphatase G OS=Arabidopsis thaliana GN=TPPG PE=2 SV=1
trembl
ID A0A067JP09
description Trehalose 6-phosphate phosphatase OS=Jatropha curcas GN=JCGZ_20788 PE=3 SV=1
Gene Ontology
ID GO:0004805
description probable trehalose-phosphate phosphatase f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32828: 153750-158927 , PASA_asmbl_32829: 153750-158927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000310_110 0.0 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
2 Hb_009189_100 0.0890134703 - - PREDICTED: patellin-6 [Jatropha curcas]
3 Hb_003935_040 0.0890527276 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
4 Hb_032260_060 0.0931985194 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
5 Hb_000162_190 0.0947021651 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
6 Hb_007290_050 0.0975451432 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
7 Hb_000345_230 0.0978949129 - - -
8 Hb_001348_010 0.1035414068 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
9 Hb_004330_040 0.1037992608 - - conserved hypothetical protein [Ricinus communis]
10 Hb_015934_080 0.1120278517 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
11 Hb_000112_080 0.1147985301 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
12 Hb_001247_090 0.1156520034 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
13 Hb_003754_020 0.1156629418 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_025787_020 0.1160453514 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
15 Hb_002292_080 0.1163104619 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_000735_020 0.1212529028 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
17 Hb_012518_080 0.1214494681 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
18 Hb_001709_090 0.1229533574 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
19 Hb_004055_090 0.125242625 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
20 Hb_009252_080 0.1259207739 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000310_110 Hb_000310_110 Hb_009189_100 Hb_009189_100 Hb_000310_110--Hb_009189_100 Hb_003935_040 Hb_003935_040 Hb_000310_110--Hb_003935_040 Hb_032260_060 Hb_032260_060 Hb_000310_110--Hb_032260_060 Hb_000162_190 Hb_000162_190 Hb_000310_110--Hb_000162_190 Hb_007290_050 Hb_007290_050 Hb_000310_110--Hb_007290_050 Hb_000345_230 Hb_000345_230 Hb_000310_110--Hb_000345_230 Hb_002171_020 Hb_002171_020 Hb_009189_100--Hb_002171_020 Hb_000329_720 Hb_000329_720 Hb_009189_100--Hb_000329_720 Hb_009189_100--Hb_007290_050 Hb_015934_080 Hb_015934_080 Hb_009189_100--Hb_015934_080 Hb_000365_430 Hb_000365_430 Hb_009189_100--Hb_000365_430 Hb_003935_040--Hb_000162_190 Hb_003935_040--Hb_000345_230 Hb_000020_050 Hb_000020_050 Hb_003935_040--Hb_000020_050 Hb_003935_040--Hb_015934_080 Hb_003935_040--Hb_009189_100 Hb_004330_040 Hb_004330_040 Hb_032260_060--Hb_004330_040 Hb_001473_060 Hb_001473_060 Hb_032260_060--Hb_001473_060 Hb_003754_020 Hb_003754_020 Hb_032260_060--Hb_003754_020 Hb_093218_010 Hb_093218_010 Hb_032260_060--Hb_093218_010 Hb_000714_060 Hb_000714_060 Hb_032260_060--Hb_000714_060 Hb_025787_020 Hb_025787_020 Hb_000162_190--Hb_025787_020 Hb_009252_080 Hb_009252_080 Hb_000162_190--Hb_009252_080 Hb_001141_440 Hb_001141_440 Hb_000162_190--Hb_001141_440 Hb_043552_010 Hb_043552_010 Hb_000162_190--Hb_043552_010 Hb_007290_050--Hb_000365_430 Hb_001366_290 Hb_001366_290 Hb_007290_050--Hb_001366_290 Hb_007290_050--Hb_015934_080 Hb_001936_180 Hb_001936_180 Hb_007290_050--Hb_001936_180 Hb_159809_040 Hb_159809_040 Hb_000345_230--Hb_159809_040 Hb_000345_230--Hb_009252_080 Hb_000345_230--Hb_001141_440 Hb_001709_090 Hb_001709_090 Hb_000345_230--Hb_001709_090 Hb_000522_160 Hb_000522_160 Hb_000345_230--Hb_000522_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.07236 7.11641 11.0161 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0256079 0 0.0761652 2.81681 2.54572

CAGE analysis