Hb_000311_030

Information

Type -
Description -
Location Contig311: 30062-32460
Sequence    

Annotation

kegg
ID sot:102593609
description S-formylglutathione hydrolase-like
nr
ID KJB12086.1
description hypothetical protein B456_002G227600 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2Q5T7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G227600 PE=4 SV=1
Gene Ontology
ID GO:0048046
description s-formylglutathione hydrolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32942: 30135-50780
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000311_030 0.0 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
2 Hb_161994_040 0.1338533478 - - -
3 Hb_006642_030 0.1493174131 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
4 Hb_008054_050 0.1522719827 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
5 Hb_065841_010 0.1828319273 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
6 Hb_068569_010 0.1843607653 - - -
7 Hb_013358_100 0.1846463525 - - unknown [Medicago truncatula]
8 Hb_011287_040 0.191175235 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
9 Hb_000311_040 0.1948846915 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
10 Hb_177152_010 0.2119920889 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
11 Hb_000703_110 0.2156275801 - - -
12 Hb_001377_280 0.2185097966 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Populus euphratica]
13 Hb_178620_010 0.2185835492 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
14 Hb_000544_180 0.2206220414 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
15 Hb_004525_080 0.2230272209 - - Sugar transporter ERD6-like 6 [Morus notabilis]
16 Hb_002235_270 0.2241691673 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
17 Hb_000739_200 0.2261228226 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
18 Hb_035436_010 0.2262111583 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
19 Hb_000053_030 0.227144007 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
20 Hb_000074_100 0.2279891704 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000311_030 Hb_000311_030 Hb_161994_040 Hb_161994_040 Hb_000311_030--Hb_161994_040 Hb_006642_030 Hb_006642_030 Hb_000311_030--Hb_006642_030 Hb_008054_050 Hb_008054_050 Hb_000311_030--Hb_008054_050 Hb_065841_010 Hb_065841_010 Hb_000311_030--Hb_065841_010 Hb_068569_010 Hb_068569_010 Hb_000311_030--Hb_068569_010 Hb_013358_100 Hb_013358_100 Hb_000311_030--Hb_013358_100 Hb_161994_040--Hb_008054_050 Hb_161994_040--Hb_065841_010 Hb_161994_040--Hb_013358_100 Hb_145317_010 Hb_145317_010 Hb_161994_040--Hb_145317_010 Hb_161994_040--Hb_006642_030 Hb_000703_110 Hb_000703_110 Hb_006642_030--Hb_000703_110 Hb_000311_040 Hb_000311_040 Hb_006642_030--Hb_000311_040 Hb_006642_030--Hb_008054_050 Hb_002344_130 Hb_002344_130 Hb_006642_030--Hb_002344_130 Hb_008054_050--Hb_145317_010 Hb_004374_130 Hb_004374_130 Hb_008054_050--Hb_004374_130 Hb_002498_050 Hb_002498_050 Hb_008054_050--Hb_002498_050 Hb_001217_040 Hb_001217_040 Hb_008054_050--Hb_001217_040 Hb_007157_060 Hb_007157_060 Hb_065841_010--Hb_007157_060 Hb_065841_010--Hb_013358_100 Hb_065841_010--Hb_008054_050 Hb_065841_010--Hb_068569_010 Hb_177152_010 Hb_177152_010 Hb_065841_010--Hb_177152_010 Hb_068569_010--Hb_013358_100 Hb_010964_020 Hb_010964_020 Hb_068569_010--Hb_010964_020 Hb_178620_010 Hb_178620_010 Hb_068569_010--Hb_178620_010 Hb_000053_030 Hb_000053_030 Hb_068569_010--Hb_000053_030 Hb_033385_010 Hb_033385_010 Hb_068569_010--Hb_033385_010 Hb_013358_100--Hb_177152_010 Hb_040747_010 Hb_040747_010 Hb_013358_100--Hb_040747_010 Hb_035436_010 Hb_035436_010 Hb_013358_100--Hb_035436_010 Hb_004935_080 Hb_004935_080 Hb_013358_100--Hb_004935_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
120.076 62.8341 52.2177 341.139 39.4909 83.7207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.5187 21.4391 12.2399 18.2428 5.69335

CAGE analysis