Hb_000311_110

Information

Type -
Description -
Location Contig311: 160765-163531
Sequence    

Annotation

kegg
ID rcu:RCOM_1216390
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_002529514.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q8RWI9
description ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2
trembl
ID B9SU45
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_1216390 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000311_110 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_001999_050 0.0793307907 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
3 Hb_119832_010 0.0877359876 - - -
4 Hb_018105_010 0.1180243038 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
5 Hb_009393_110 0.1215522247 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
6 Hb_003440_080 0.1230148245 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_000780_160 0.1243186224 - - hypothetical protein RCOM_0483300 [Ricinus communis]
8 Hb_000289_090 0.1365613138 - - -
9 Hb_004994_200 0.1378850436 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
10 Hb_008225_020 0.1404384062 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
11 Hb_000039_120 0.1433358432 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
12 Hb_171900_110 0.1457297463 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
13 Hb_000951_070 0.1479174259 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
14 Hb_012796_030 0.1544925267 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
15 Hb_000574_340 0.1558389327 - - hypothetical protein RCOM_0901420 [Ricinus communis]
16 Hb_004951_030 0.1584828753 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
17 Hb_003796_010 0.1625048543 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_004884_210 0.1648059982 - - PREDICTED: mitoferrin-like [Jatropha curcas]
19 Hb_004372_050 0.1662099023 - - putative receptor-like protein kinase [Morus notabilis]
20 Hb_004126_050 0.1683547789 - - PREDICTED: L-type lectin-domain containing receptor kinase VII.1 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_000311_110 Hb_000311_110 Hb_001999_050 Hb_001999_050 Hb_000311_110--Hb_001999_050 Hb_119832_010 Hb_119832_010 Hb_000311_110--Hb_119832_010 Hb_018105_010 Hb_018105_010 Hb_000311_110--Hb_018105_010 Hb_009393_110 Hb_009393_110 Hb_000311_110--Hb_009393_110 Hb_003440_080 Hb_003440_080 Hb_000311_110--Hb_003440_080 Hb_000780_160 Hb_000780_160 Hb_000311_110--Hb_000780_160 Hb_001999_050--Hb_018105_010 Hb_001205_170 Hb_001205_170 Hb_001999_050--Hb_001205_170 Hb_001999_050--Hb_119832_010 Hb_000039_120 Hb_000039_120 Hb_001999_050--Hb_000039_120 Hb_171900_110 Hb_171900_110 Hb_001999_050--Hb_171900_110 Hb_119832_010--Hb_009393_110 Hb_029510_060 Hb_029510_060 Hb_119832_010--Hb_029510_060 Hb_004951_030 Hb_004951_030 Hb_119832_010--Hb_004951_030 Hb_119832_010--Hb_003440_080 Hb_003796_010 Hb_003796_010 Hb_119832_010--Hb_003796_010 Hb_018105_010--Hb_004951_030 Hb_018105_010--Hb_009393_110 Hb_018105_010--Hb_119832_010 Hb_004643_020 Hb_004643_020 Hb_018105_010--Hb_004643_020 Hb_009393_110--Hb_003796_010 Hb_009393_110--Hb_004951_030 Hb_008225_020 Hb_008225_020 Hb_009393_110--Hb_008225_020 Hb_000951_070 Hb_000951_070 Hb_009393_110--Hb_000951_070 Hb_000574_340 Hb_000574_340 Hb_003440_080--Hb_000574_340 Hb_012796_030 Hb_012796_030 Hb_003440_080--Hb_012796_030 Hb_000289_090 Hb_000289_090 Hb_003440_080--Hb_000289_090 Hb_003440_080--Hb_000951_070 Hb_027337_130 Hb_027337_130 Hb_003440_080--Hb_027337_130 Hb_004126_050 Hb_004126_050 Hb_000780_160--Hb_004126_050 Hb_006243_010 Hb_006243_010 Hb_000780_160--Hb_006243_010 Hb_000780_160--Hb_171900_110 Hb_000780_160--Hb_000039_120 Hb_000032_590 Hb_000032_590 Hb_000780_160--Hb_000032_590 Hb_019863_050 Hb_019863_050 Hb_000780_160--Hb_019863_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0111606 2.97685 0.834423 0.876316 0.0111783 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0253842 0 0 0.18295 5.55314

CAGE analysis