Hb_000311_120

Information

Type -
Description -
Location Contig311: 163220-182201
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04760g
description POPTRDRAFT_1080427; hypothetical protein
nr
ID XP_011048078.1
description PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
swissprot
ID O22229
description NADPH-dependent thioredoxin reductase 3 OS=Arabidopsis thaliana GN=NTRC PE=1 SV=2
trembl
ID A0A0B0NWL4
description Thioredoxin reductase OS=Gossypium arboreum GN=F383_23432 PE=3 SV=1
Gene Ontology
ID GO:0009570
description thioredoxin reductase ntrc

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32944: 165980-170459 , PASA_asmbl_32945: 168193-168308 , PASA_asmbl_32946: 171987-172404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000311_120 0.0 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
2 Hb_010174_090 0.054641187 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
3 Hb_006787_090 0.0556319713 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
4 Hb_000580_150 0.0760501152 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
5 Hb_000555_020 0.0879178859 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
6 Hb_033312_010 0.0886746999 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_003529_140 0.091450388 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
8 Hb_003752_070 0.0917065971 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
9 Hb_001438_010 0.0934324485 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
10 Hb_114310_070 0.0952166159 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
11 Hb_000613_120 0.0956606382 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
12 Hb_005389_170 0.0959894233 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
13 Hb_000144_060 0.0985026368 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_006569_040 0.0993253435 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
15 Hb_001935_100 0.1041661094 - - structural molecule, putative [Ricinus communis]
16 Hb_004871_010 0.104677169 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
17 Hb_000220_210 0.1069788929 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
18 Hb_005162_110 0.1073096218 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
19 Hb_009775_010 0.1078631737 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
20 Hb_005235_070 0.1079592903 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000311_120 Hb_000311_120 Hb_010174_090 Hb_010174_090 Hb_000311_120--Hb_010174_090 Hb_006787_090 Hb_006787_090 Hb_000311_120--Hb_006787_090 Hb_000580_150 Hb_000580_150 Hb_000311_120--Hb_000580_150 Hb_000555_020 Hb_000555_020 Hb_000311_120--Hb_000555_020 Hb_033312_010 Hb_033312_010 Hb_000311_120--Hb_033312_010 Hb_003529_140 Hb_003529_140 Hb_000311_120--Hb_003529_140 Hb_000613_120 Hb_000613_120 Hb_010174_090--Hb_000613_120 Hb_010174_090--Hb_006787_090 Hb_010174_090--Hb_003529_140 Hb_006569_040 Hb_006569_040 Hb_010174_090--Hb_006569_040 Hb_000826_030 Hb_000826_030 Hb_010174_090--Hb_000826_030 Hb_003752_070 Hb_003752_070 Hb_006787_090--Hb_003752_070 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_006787_090--Hb_000613_120 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_009775_010 Hb_009775_010 Hb_000580_150--Hb_009775_010 Hb_001438_010 Hb_001438_010 Hb_000580_150--Hb_001438_010 Hb_000221_140 Hb_000221_140 Hb_000580_150--Hb_000221_140 Hb_000580_150--Hb_010174_090 Hb_001935_100 Hb_001935_100 Hb_000580_150--Hb_001935_100 Hb_000107_340 Hb_000107_340 Hb_000555_020--Hb_000107_340 Hb_005235_070 Hb_005235_070 Hb_000555_020--Hb_005235_070 Hb_002150_140 Hb_002150_140 Hb_000555_020--Hb_002150_140 Hb_102948_010 Hb_102948_010 Hb_000555_020--Hb_102948_010 Hb_114310_070 Hb_114310_070 Hb_000555_020--Hb_114310_070 Hb_033312_010--Hb_114310_070 Hb_013405_080 Hb_013405_080 Hb_033312_010--Hb_013405_080 Hb_001660_120 Hb_001660_120 Hb_033312_010--Hb_001660_120 Hb_134849_010 Hb_134849_010 Hb_033312_010--Hb_134849_010 Hb_002774_190 Hb_002774_190 Hb_033312_010--Hb_002774_190 Hb_000032_500 Hb_000032_500 Hb_033312_010--Hb_000032_500 Hb_003529_140--Hb_006569_040 Hb_001828_120 Hb_001828_120 Hb_003529_140--Hb_001828_120 Hb_002600_070 Hb_002600_070 Hb_003529_140--Hb_002600_070 Hb_003529_140--Hb_000555_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.34888 7.71667 20.7342 5.77585 6.64041 5.20974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43776 8.58189 3.57391 5.84238 22.9262

CAGE analysis