Hb_000312_070

Information

Type -
Description -
Location Contig312: 211194-212804
Sequence    

Annotation

kegg
ID rcu:RCOM_0486810
description hypothetical protein
nr
ID XP_002524174.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDV5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0486810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32983: 210982-211345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000312_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000152_180 0.0965178384 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
3 Hb_017193_010 0.1332298783 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
4 Hb_009771_060 0.1385660433 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
5 Hb_000392_450 0.1459926806 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
6 Hb_001102_050 0.1490791518 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
7 Hb_007263_010 0.1498524669 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
8 Hb_000975_240 0.1499524504 - - hypothetical protein JCGZ_22006 [Jatropha curcas]
9 Hb_000574_470 0.1506532302 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_007217_010 0.1511262358 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
11 Hb_005332_080 0.1511438939 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
12 Hb_002027_320 0.1518235707 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
13 Hb_002871_040 0.1527940649 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
14 Hb_010318_010 0.156350505 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
15 Hb_003835_110 0.1583454209 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
16 Hb_011386_050 0.1599874559 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
17 Hb_011476_030 0.1608566637 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
18 Hb_000431_150 0.1666552889 - - ribosomal protein L27, putative [Ricinus communis]
19 Hb_004517_030 0.1671969973 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001623_500 0.1675080126 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]

Gene co-expression network

sample Hb_000312_070 Hb_000312_070 Hb_000152_180 Hb_000152_180 Hb_000312_070--Hb_000152_180 Hb_017193_010 Hb_017193_010 Hb_000312_070--Hb_017193_010 Hb_009771_060 Hb_009771_060 Hb_000312_070--Hb_009771_060 Hb_000392_450 Hb_000392_450 Hb_000312_070--Hb_000392_450 Hb_001102_050 Hb_001102_050 Hb_000312_070--Hb_001102_050 Hb_007263_010 Hb_007263_010 Hb_000312_070--Hb_007263_010 Hb_011476_030 Hb_011476_030 Hb_000152_180--Hb_011476_030 Hb_005332_080 Hb_005332_080 Hb_000152_180--Hb_005332_080 Hb_000152_180--Hb_009771_060 Hb_001541_110 Hb_001541_110 Hb_000152_180--Hb_001541_110 Hb_007217_010 Hb_007217_010 Hb_000152_180--Hb_007217_010 Hb_002871_040 Hb_002871_040 Hb_017193_010--Hb_002871_040 Hb_172979_010 Hb_172979_010 Hb_017193_010--Hb_172979_010 Hb_101334_020 Hb_101334_020 Hb_017193_010--Hb_101334_020 Hb_001623_500 Hb_001623_500 Hb_017193_010--Hb_001623_500 Hb_003835_110 Hb_003835_110 Hb_017193_010--Hb_003835_110 Hb_000579_080 Hb_000579_080 Hb_017193_010--Hb_000579_080 Hb_003077_150 Hb_003077_150 Hb_009771_060--Hb_003077_150 Hb_009771_060--Hb_007263_010 Hb_002194_050 Hb_002194_050 Hb_009771_060--Hb_002194_050 Hb_009771_060--Hb_005332_080 Hb_007451_040 Hb_007451_040 Hb_009771_060--Hb_007451_040 Hb_004517_030 Hb_004517_030 Hb_000392_450--Hb_004517_030 Hb_000392_450--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000392_450--Hb_002027_320 Hb_003874_010 Hb_003874_010 Hb_000392_450--Hb_003874_010 Hb_000392_450--Hb_007217_010 Hb_000212_250 Hb_000212_250 Hb_000392_450--Hb_000212_250 Hb_000926_080 Hb_000926_080 Hb_001102_050--Hb_000926_080 Hb_001102_050--Hb_002027_320 Hb_001102_050--Hb_002871_040 Hb_001804_090 Hb_001804_090 Hb_001102_050--Hb_001804_090 Hb_001102_050--Hb_003835_110 Hb_000003_780 Hb_000003_780 Hb_001102_050--Hb_000003_780 Hb_007263_010--Hb_007451_040 Hb_004994_080 Hb_004994_080 Hb_007263_010--Hb_004994_080 Hb_007263_010--Hb_002027_320 Hb_006555_040 Hb_006555_040 Hb_007263_010--Hb_006555_040 Hb_011386_050 Hb_011386_050 Hb_007263_010--Hb_011386_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163418 0.294635 1.91168 0.193007 0.312799 0.0952871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.345837 0.407957 0.248493 0.402108 0.736019

CAGE analysis