Hb_000312_080

Information

Type -
Description -
Location Contig312: 213418-214774
Sequence    

Annotation

kegg
ID rcu:RCOM_0486820
description hypothetical protein
nr
ID XP_012086343.1
description PREDICTED: transmembrane protein 97-like [Jatropha curcas]
swissprot
ID Q6DFQ5
description Transmembrane protein 97 OS=Xenopus tropicalis GN=tmem97 PE=2 SV=1
trembl
ID A0A067JPF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22871 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 97-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32984: 211882-214755 , PASA_asmbl_32985: 211941-213454
cDNA
(Sanger)
(ID:Location)		 006_L08r.ab1: 214948-221950

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000312_080 0.0 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
2 Hb_001215_040 0.0690945582 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000431_170 0.0716483691 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
4 Hb_002197_050 0.0719844044 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
5 Hb_005914_170 0.0812394597 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
6 Hb_005588_060 0.0824873298 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
7 Hb_003813_050 0.0832001999 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
8 Hb_000136_260 0.0839919181 - - 40S ribosomal protein S5A [Hevea brasiliensis]
9 Hb_000948_160 0.0840497226 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
10 Hb_002936_010 0.0842873674 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
11 Hb_011344_120 0.0853087033 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
12 Hb_000460_030 0.0855322901 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
13 Hb_004109_340 0.0859233905 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
14 Hb_023001_040 0.0884020652 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
15 Hb_003994_230 0.0892030877 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
16 Hb_000173_280 0.0895921304 - - Speckle-type POZ protein, putative [Ricinus communis]
17 Hb_023732_030 0.0900001285 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
18 Hb_000032_380 0.090638062 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000684_380 0.0917979643 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
20 Hb_001278_100 0.092090561 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]

Gene co-expression network

sample Hb_000312_080 Hb_000312_080 Hb_001215_040 Hb_001215_040 Hb_000312_080--Hb_001215_040 Hb_000431_170 Hb_000431_170 Hb_000312_080--Hb_000431_170 Hb_002197_050 Hb_002197_050 Hb_000312_080--Hb_002197_050 Hb_005914_170 Hb_005914_170 Hb_000312_080--Hb_005914_170 Hb_005588_060 Hb_005588_060 Hb_000312_080--Hb_005588_060 Hb_003813_050 Hb_003813_050 Hb_000312_080--Hb_003813_050 Hb_000175_540 Hb_000175_540 Hb_001215_040--Hb_000175_540 Hb_000023_280 Hb_000023_280 Hb_001215_040--Hb_000023_280 Hb_011344_120 Hb_011344_120 Hb_001215_040--Hb_011344_120 Hb_001653_020 Hb_001653_020 Hb_001215_040--Hb_001653_020 Hb_005365_030 Hb_005365_030 Hb_001215_040--Hb_005365_030 Hb_000948_160 Hb_000948_160 Hb_000431_170--Hb_000948_160 Hb_006693_020 Hb_006693_020 Hb_000431_170--Hb_006693_020 Hb_000081_160 Hb_000081_160 Hb_000431_170--Hb_000081_160 Hb_000460_030 Hb_000460_030 Hb_000431_170--Hb_000460_030 Hb_000390_300 Hb_000390_300 Hb_000431_170--Hb_000390_300 Hb_010098_050 Hb_010098_050 Hb_000431_170--Hb_010098_050 Hb_000137_090 Hb_000137_090 Hb_002197_050--Hb_000137_090 Hb_002197_050--Hb_000948_160 Hb_002197_050--Hb_000431_170 Hb_000003_320 Hb_000003_320 Hb_002197_050--Hb_000003_320 Hb_031340_050 Hb_031340_050 Hb_002197_050--Hb_031340_050 Hb_000210_120 Hb_000210_120 Hb_005914_170--Hb_000210_120 Hb_005914_170--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_005914_170--Hb_001314_050 Hb_031862_100 Hb_031862_100 Hb_005914_170--Hb_031862_100 Hb_003633_050 Hb_003633_050 Hb_005914_170--Hb_003633_050 Hb_023001_040 Hb_023001_040 Hb_005914_170--Hb_023001_040 Hb_003058_120 Hb_003058_120 Hb_005588_060--Hb_003058_120 Hb_002936_010 Hb_002936_010 Hb_005588_060--Hb_002936_010 Hb_006570_080 Hb_006570_080 Hb_005588_060--Hb_006570_080 Hb_004108_220 Hb_004108_220 Hb_005588_060--Hb_004108_220 Hb_000173_280 Hb_000173_280 Hb_005588_060--Hb_000173_280 Hb_005588_060--Hb_023001_040 Hb_000181_050 Hb_000181_050 Hb_003813_050--Hb_000181_050 Hb_005725_270 Hb_005725_270 Hb_003813_050--Hb_005725_270 Hb_003813_050--Hb_002197_050 Hb_002889_030 Hb_002889_030 Hb_003813_050--Hb_002889_030 Hb_001348_020 Hb_001348_020 Hb_003813_050--Hb_001348_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.02199 10.6716 10.9324 17.429 11.748 10.9286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8684 23.4246 13.0646 21.2704 7.61784

CAGE analysis