Hb_000313_010

Information

Type -
Description -
Location Contig313: 10112-16524
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID AHC13200.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID -
description -
trembl
ID V9QEM3
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003824
description peptide transporter ptr2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33130: 15815-16622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_010 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_001638_240 0.1356890944 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
3 Hb_001357_080 0.1402540021 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
4 Hb_002539_090 0.1421528433 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
5 Hb_001579_310 0.1446850692 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37320 [Jatropha curcas]
6 Hb_000672_120 0.1480658785 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
7 Hb_007594_090 0.151050022 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
8 Hb_000224_120 0.1513087907 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
9 Hb_010449_040 0.1552996626 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
10 Hb_005588_070 0.1553489559 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
11 Hb_003663_070 0.160331665 - - -
12 Hb_002482_040 0.1692480496 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
13 Hb_002843_210 0.1709234124 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
14 Hb_006472_050 0.1720870719 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
15 Hb_003561_030 0.1728738756 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
16 Hb_008841_010 0.1740026079 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
17 Hb_004336_050 0.1754935938 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
18 Hb_001173_040 0.1811852341 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_001862_100 0.1822781212 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
20 Hb_004374_140 0.18284154 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]

Gene co-expression network

sample Hb_000313_010 Hb_000313_010 Hb_001638_240 Hb_001638_240 Hb_000313_010--Hb_001638_240 Hb_001357_080 Hb_001357_080 Hb_000313_010--Hb_001357_080 Hb_002539_090 Hb_002539_090 Hb_000313_010--Hb_002539_090 Hb_001579_310 Hb_001579_310 Hb_000313_010--Hb_001579_310 Hb_000672_120 Hb_000672_120 Hb_000313_010--Hb_000672_120 Hb_007594_090 Hb_007594_090 Hb_000313_010--Hb_007594_090 Hb_003663_070 Hb_003663_070 Hb_001638_240--Hb_003663_070 Hb_001935_150 Hb_001935_150 Hb_001638_240--Hb_001935_150 Hb_004659_060 Hb_004659_060 Hb_001638_240--Hb_004659_060 Hb_002843_210 Hb_002843_210 Hb_001638_240--Hb_002843_210 Hb_005588_070 Hb_005588_070 Hb_001638_240--Hb_005588_070 Hb_001638_240--Hb_000672_120 Hb_001357_080--Hb_002539_090 Hb_000046_110 Hb_000046_110 Hb_001357_080--Hb_000046_110 Hb_010436_060 Hb_010436_060 Hb_001357_080--Hb_010436_060 Hb_000751_130 Hb_000751_130 Hb_001357_080--Hb_000751_130 Hb_006641_010 Hb_006641_010 Hb_001357_080--Hb_006641_010 Hb_029866_070 Hb_029866_070 Hb_001357_080--Hb_029866_070 Hb_001258_080 Hb_001258_080 Hb_002539_090--Hb_001258_080 Hb_002539_090--Hb_000751_130 Hb_001173_040 Hb_001173_040 Hb_002539_090--Hb_001173_040 Hb_002539_090--Hb_007594_090 Hb_000172_030 Hb_000172_030 Hb_002539_090--Hb_000172_030 Hb_001579_310--Hb_007594_090 Hb_003561_030 Hb_003561_030 Hb_001579_310--Hb_003561_030 Hb_001579_310--Hb_002843_210 Hb_001579_310--Hb_002539_090 Hb_012423_050 Hb_012423_050 Hb_001579_310--Hb_012423_050 Hb_004336_050 Hb_004336_050 Hb_000672_120--Hb_004336_050 Hb_000672_120--Hb_007594_090 Hb_172706_030 Hb_172706_030 Hb_000672_120--Hb_172706_030 Hb_000672_120--Hb_005588_070 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_001307_090 Hb_001307_090 Hb_000672_120--Hb_001307_090 Hb_000975_110 Hb_000975_110 Hb_007594_090--Hb_000975_110 Hb_007594_090--Hb_004336_050 Hb_007594_090--Hb_000751_130 Hb_007594_090--Hb_003561_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.202283 0.117857 0.0817519 1.09592 0.554888 2.23365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97484 2.77656 3.17459 0.265889 0.285841

CAGE analysis