Hb_000313_020

Information

Type -
Description -
Location Contig313: 18500-21639
Sequence    

Annotation

kegg
ID tcc:TCM_034937
description Endoplasmic reticulum vesicle transporter protein isoform 1
nr
ID XP_007018817.1
description Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
swissprot
ID Q6NVS2
description Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1
trembl
ID A0A061FH36
description Endoplasmic reticulum vesicle transporter protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_034937 PE=4 SV=1
Gene Ontology
ID GO:0005774
description endoplasmic reticulum-golgi intermediate compartment protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_020 0.0 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
2 Hb_001205_010 0.0093036165 - - -
3 Hb_008725_160 0.0886234235 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000092_160 0.3061566536 - - PREDICTED: 18 kDa seed maturation protein [Populus euphratica]
5 Hb_005686_070 0.3077275939 - - hypothetical protein RCOM_1078540 [Ricinus communis]
6 Hb_003041_040 0.3230654998 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
7 Hb_020763_020 0.3246880046 - - hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
8 Hb_011692_030 0.3247857414 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
9 Hb_062827_010 0.3328146145 - - -
10 Hb_000093_070 0.3425972397 transcription factor TF Family: C2C2-YABBY Protein CRABS CLAW, putative [Ricinus communis]
11 Hb_087999_010 0.3425979083 - - PREDICTED: uncharacterized protein LOC105640118 [Jatropha curcas]
12 Hb_132840_040 0.3427140028 - - 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
13 Hb_009078_040 0.3456875129 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
14 Hb_156850_010 0.3514596699 - - PREDICTED: uncharacterized protein LOC105635403 [Jatropha curcas]
15 Hb_004102_120 0.3645254109 - - -
16 Hb_004324_170 0.365867613 - - -
17 Hb_002539_030 0.3667390146 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
18 Hb_007545_040 0.3682502193 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
19 Hb_162189_010 0.3703181289 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_012019_040 0.3844199947 - - -

Gene co-expression network

sample Hb_000313_020 Hb_000313_020 Hb_001205_010 Hb_001205_010 Hb_000313_020--Hb_001205_010 Hb_008725_160 Hb_008725_160 Hb_000313_020--Hb_008725_160 Hb_000092_160 Hb_000092_160 Hb_000313_020--Hb_000092_160 Hb_005686_070 Hb_005686_070 Hb_000313_020--Hb_005686_070 Hb_003041_040 Hb_003041_040 Hb_000313_020--Hb_003041_040 Hb_020763_020 Hb_020763_020 Hb_000313_020--Hb_020763_020 Hb_001205_010--Hb_008725_160 Hb_001205_010--Hb_005686_070 Hb_001205_010--Hb_000092_160 Hb_001205_010--Hb_003041_040 Hb_001205_010--Hb_020763_020 Hb_008725_160--Hb_005686_070 Hb_002539_030 Hb_002539_030 Hb_008725_160--Hb_002539_030 Hb_012019_040 Hb_012019_040 Hb_008725_160--Hb_012019_040 Hb_076223_020 Hb_076223_020 Hb_008725_160--Hb_076223_020 Hb_001776_230 Hb_001776_230 Hb_000092_160--Hb_001776_230 Hb_000032_190 Hb_000032_190 Hb_000092_160--Hb_000032_190 Hb_000092_160--Hb_008725_160 Hb_000092_160--Hb_002539_030 Hb_004310_010 Hb_004310_010 Hb_005686_070--Hb_004310_010 Hb_159500_010 Hb_159500_010 Hb_005686_070--Hb_159500_010 Hb_005686_070--Hb_002539_030 Hb_003041_040--Hb_020763_020 Hb_011692_030 Hb_011692_030 Hb_003041_040--Hb_011692_030 Hb_062827_010 Hb_062827_010 Hb_003041_040--Hb_062827_010 Hb_004102_120 Hb_004102_120 Hb_003041_040--Hb_004102_120 Hb_003861_130 Hb_003861_130 Hb_003041_040--Hb_003861_130 Hb_001623_030 Hb_001623_030 Hb_003041_040--Hb_001623_030 Hb_020763_020--Hb_011692_030 Hb_020763_020--Hb_062827_010 Hb_020763_020--Hb_004102_120 Hb_020763_020--Hb_003861_130 Hb_020763_020--Hb_001623_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0408683 0.0366772 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111782 0 0 0 0

CAGE analysis