Hb_000313_100

Information

Type rubber biosynthesis
Description Gene Name: CPT4
Location Contig313: 137154-138260
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10380g
description hypothetical protein
nr
ID XP_012065381.1
description PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
swissprot
ID Q9V157
description Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=uppS PE=3 SV=1
trembl
ID U5GH64
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s10380g PE=3 SV=1
Gene Ontology
ID GO:0016765
description undecaprenyl diphosphate

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_100 0.0 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
2 Hb_175670_010 0.0354549523 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_005569_030 0.0650992806 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
4 Hb_033153_040 0.0946103073 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_004324_220 0.0970957852 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
6 Hb_002890_320 0.0993156306 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
7 Hb_001821_050 0.1092864822 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
8 Hb_004837_110 0.1128611451 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
9 Hb_044624_010 0.1136092096 - - -
10 Hb_003562_040 0.1136447091 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
11 Hb_004143_140 0.114114462 - - glycosyltransferase, partial [Arabidopsis thaliana]
12 Hb_001046_040 0.1155169799 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_033312_090 0.121329936 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
14 Hb_007102_010 0.122412927 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
15 Hb_007007_090 0.1239933429 - - phospholipase d beta, putative [Ricinus communis]
16 Hb_000049_290 0.125413557 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
17 Hb_002375_080 0.1259945613 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000260_480 0.1282396754 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
19 Hb_064293_010 0.1313974992 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_002783_140 0.1326486448 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]

Gene co-expression network

sample Hb_000313_100 Hb_000313_100 Hb_175670_010 Hb_175670_010 Hb_000313_100--Hb_175670_010 Hb_005569_030 Hb_005569_030 Hb_000313_100--Hb_005569_030 Hb_033153_040 Hb_033153_040 Hb_000313_100--Hb_033153_040 Hb_004324_220 Hb_004324_220 Hb_000313_100--Hb_004324_220 Hb_002890_320 Hb_002890_320 Hb_000313_100--Hb_002890_320 Hb_001821_050 Hb_001821_050 Hb_000313_100--Hb_001821_050 Hb_175670_010--Hb_005569_030 Hb_175670_010--Hb_004324_220 Hb_003562_040 Hb_003562_040 Hb_175670_010--Hb_003562_040 Hb_044624_010 Hb_044624_010 Hb_175670_010--Hb_044624_010 Hb_001046_040 Hb_001046_040 Hb_175670_010--Hb_001046_040 Hb_005569_030--Hb_033153_040 Hb_005569_030--Hb_002890_320 Hb_001515_030 Hb_001515_030 Hb_005569_030--Hb_001515_030 Hb_167272_010 Hb_167272_010 Hb_005569_030--Hb_167272_010 Hb_002849_120 Hb_002849_120 Hb_033153_040--Hb_002849_120 Hb_000680_020 Hb_000680_020 Hb_033153_040--Hb_000680_020 Hb_003077_140 Hb_003077_140 Hb_033153_040--Hb_003077_140 Hb_001153_090 Hb_001153_090 Hb_033153_040--Hb_001153_090 Hb_004324_220--Hb_044624_010 Hb_022487_010 Hb_022487_010 Hb_004324_220--Hb_022487_010 Hb_004324_220--Hb_001046_040 Hb_000049_290 Hb_000049_290 Hb_004324_220--Hb_000049_290 Hb_004837_110 Hb_004837_110 Hb_002890_320--Hb_004837_110 Hb_007102_010 Hb_007102_010 Hb_002890_320--Hb_007102_010 Hb_012098_180 Hb_012098_180 Hb_002890_320--Hb_012098_180 Hb_000237_070 Hb_000237_070 Hb_002890_320--Hb_000237_070 Hb_004724_300 Hb_004724_300 Hb_001821_050--Hb_004724_300 Hb_001821_050--Hb_007102_010 Hb_001677_120 Hb_001677_120 Hb_001821_050--Hb_001677_120 Hb_134022_010 Hb_134022_010 Hb_001821_050--Hb_134022_010 Hb_001821_050--Hb_004837_110 Hb_002375_080 Hb_002375_080 Hb_001821_050--Hb_002375_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.87304 0.342835 0.283747 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.169348 0.507125

CAGE analysis