Hb_000313_230

Information

Type -
Description -
Location Contig313: 329431-333082
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12630g
description POPTRDRAFT_418950; hypothetical protein
nr
ID XP_012075677.1
description PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09266 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33143: 330116-331956 , PASA_asmbl_33144: 330658-332109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_230 0.0 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
2 Hb_005332_050 0.1193064064 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
3 Hb_001054_060 0.1308557518 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
4 Hb_006594_080 0.1351628917 - - beta-glucosidase, putative [Ricinus communis]
5 Hb_005288_060 0.1429598719 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
6 Hb_000997_320 0.1440242081 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
7 Hb_001310_050 0.1440797606 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
8 Hb_002518_180 0.1484716466 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
9 Hb_004032_110 0.1488171983 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
10 Hb_187959_010 0.1491344956 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
11 Hb_001894_010 0.1530828344 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
12 Hb_036388_010 0.1567151929 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
13 Hb_000680_070 0.1578919333 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
14 Hb_001278_090 0.1597359054 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
15 Hb_000970_020 0.1614295763 - - hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
16 Hb_007134_030 0.1629925107 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
17 Hb_008066_080 0.1630223161 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
18 Hb_000140_500 0.1638597383 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000917_210 0.1641825826 - - conserved hypothetical protein [Ricinus communis]
20 Hb_046117_030 0.1651784014 - - sialyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000313_230 Hb_000313_230 Hb_005332_050 Hb_005332_050 Hb_000313_230--Hb_005332_050 Hb_001054_060 Hb_001054_060 Hb_000313_230--Hb_001054_060 Hb_006594_080 Hb_006594_080 Hb_000313_230--Hb_006594_080 Hb_005288_060 Hb_005288_060 Hb_000313_230--Hb_005288_060 Hb_000997_320 Hb_000997_320 Hb_000313_230--Hb_000997_320 Hb_001310_050 Hb_001310_050 Hb_000313_230--Hb_001310_050 Hb_004607_160 Hb_004607_160 Hb_005332_050--Hb_004607_160 Hb_167211_010 Hb_167211_010 Hb_005332_050--Hb_167211_010 Hb_000130_480 Hb_000130_480 Hb_005332_050--Hb_000130_480 Hb_007850_110 Hb_007850_110 Hb_005332_050--Hb_007850_110 Hb_000836_030 Hb_000836_030 Hb_005332_050--Hb_000836_030 Hb_001778_040 Hb_001778_040 Hb_005332_050--Hb_001778_040 Hb_000032_600 Hb_000032_600 Hb_001054_060--Hb_000032_600 Hb_187959_010 Hb_187959_010 Hb_001054_060--Hb_187959_010 Hb_067664_010 Hb_067664_010 Hb_001054_060--Hb_067664_010 Hb_000977_150 Hb_000977_150 Hb_001054_060--Hb_000977_150 Hb_030312_030 Hb_030312_030 Hb_001054_060--Hb_030312_030 Hb_001054_060--Hb_000997_320 Hb_006594_080--Hb_005332_050 Hb_003992_220 Hb_003992_220 Hb_006594_080--Hb_003992_220 Hb_006594_080--Hb_167211_010 Hb_000442_170 Hb_000442_170 Hb_006594_080--Hb_000442_170 Hb_006594_080--Hb_005288_060 Hb_000414_180 Hb_000414_180 Hb_005288_060--Hb_000414_180 Hb_000574_250 Hb_000574_250 Hb_005288_060--Hb_000574_250 Hb_010068_050 Hb_010068_050 Hb_005288_060--Hb_010068_050 Hb_002874_030 Hb_002874_030 Hb_005288_060--Hb_002874_030 Hb_036388_010 Hb_036388_010 Hb_000997_320--Hb_036388_010 Hb_001195_370 Hb_001195_370 Hb_000997_320--Hb_001195_370 Hb_000997_320--Hb_030312_030 Hb_000768_150 Hb_000768_150 Hb_000997_320--Hb_000768_150 Hb_000329_080 Hb_000329_080 Hb_000997_320--Hb_000329_080 Hb_002518_180 Hb_002518_180 Hb_001310_050--Hb_002518_180 Hb_003783_050 Hb_003783_050 Hb_001310_050--Hb_003783_050 Hb_001310_050--Hb_030312_030 Hb_001310_050--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_001310_050--Hb_004326_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0186001 0.20086 0.362463 0.787002 0 0.0455568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0340801 0.0268106 0.100438 0.717796 1.11807

CAGE analysis