Hb_000313_300

Information

Type -
Description -
Location Contig313: 427398-429987
Sequence    

Annotation

kegg
ID tcc:TCM_006073
description F-box/LRR-repeat protein 23, putative isoform 1
nr
ID XP_012075669.1
description PREDICTED: F-box protein SKIP19-like [Jatropha curcas]
swissprot
ID Q9M0U9
description F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1
trembl
ID A0A067KSZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09257 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33156: 427499-429171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_300 0.0 - - PREDICTED: F-box protein SKIP19-like [Jatropha curcas]
2 Hb_000106_130 0.0569807035 - - unnamed protein product [Vitis vinifera]
3 Hb_097783_020 0.0937509151 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
4 Hb_000211_110 0.0941245153 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
5 Hb_001357_380 0.0970253745 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000785_030 0.0983741787 - - hypothetical protein RCOM_0808030 [Ricinus communis]
7 Hb_006916_040 0.1001722132 - - 60S ribosomal protein L7a, putative [Ricinus communis]
8 Hb_000261_110 0.1049710128 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
9 Hb_001894_030 0.1115114984 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
10 Hb_004631_180 0.1116075762 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
11 Hb_000959_270 0.1118165468 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
12 Hb_009111_040 0.1139003166 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
13 Hb_000661_160 0.1142398289 - - hexokinase [Manihot esculenta]
14 Hb_000174_110 0.1157073049 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
15 Hb_009222_010 0.1171033453 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_000979_170 0.1182348567 - - clathrin assembly protein, putative [Ricinus communis]
17 Hb_004122_040 0.1190008825 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
18 Hb_001195_260 0.1192714895 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
19 Hb_000576_020 0.1207099614 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
20 Hb_000392_050 0.1215851742 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000313_300 Hb_000313_300 Hb_000106_130 Hb_000106_130 Hb_000313_300--Hb_000106_130 Hb_097783_020 Hb_097783_020 Hb_000313_300--Hb_097783_020 Hb_000211_110 Hb_000211_110 Hb_000313_300--Hb_000211_110 Hb_001357_380 Hb_001357_380 Hb_000313_300--Hb_001357_380 Hb_000785_030 Hb_000785_030 Hb_000313_300--Hb_000785_030 Hb_006916_040 Hb_006916_040 Hb_000313_300--Hb_006916_040 Hb_000106_130--Hb_001357_380 Hb_000106_130--Hb_000211_110 Hb_000106_130--Hb_000785_030 Hb_001894_030 Hb_001894_030 Hb_000106_130--Hb_001894_030 Hb_000174_110 Hb_000174_110 Hb_000106_130--Hb_000174_110 Hb_011224_060 Hb_011224_060 Hb_097783_020--Hb_011224_060 Hb_000771_080 Hb_000771_080 Hb_097783_020--Hb_000771_080 Hb_005618_160 Hb_005618_160 Hb_097783_020--Hb_005618_160 Hb_003292_040 Hb_003292_040 Hb_097783_020--Hb_003292_040 Hb_011970_030 Hb_011970_030 Hb_097783_020--Hb_011970_030 Hb_000211_110--Hb_001894_030 Hb_000211_110--Hb_001357_380 Hb_000920_280 Hb_000920_280 Hb_000211_110--Hb_000920_280 Hb_000640_020 Hb_000640_020 Hb_000211_110--Hb_000640_020 Hb_011848_010 Hb_011848_010 Hb_000211_110--Hb_011848_010 Hb_000059_140 Hb_000059_140 Hb_000211_110--Hb_000059_140 Hb_001357_380--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_001357_380--Hb_011942_080 Hb_001486_340 Hb_001486_340 Hb_001357_380--Hb_001486_340 Hb_001357_380--Hb_001894_030 Hb_000392_050 Hb_000392_050 Hb_000785_030--Hb_000392_050 Hb_009222_010 Hb_009222_010 Hb_000785_030--Hb_009222_010 Hb_000959_270 Hb_000959_270 Hb_000785_030--Hb_000959_270 Hb_002942_050 Hb_002942_050 Hb_000785_030--Hb_002942_050 Hb_001910_020 Hb_001910_020 Hb_000785_030--Hb_001910_020 Hb_000785_030--Hb_000059_140 Hb_004631_180 Hb_004631_180 Hb_006916_040--Hb_004631_180 Hb_000576_020 Hb_000576_020 Hb_006916_040--Hb_000576_020 Hb_000256_190 Hb_000256_190 Hb_006916_040--Hb_000256_190 Hb_001051_080 Hb_001051_080 Hb_006916_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_006916_040--Hb_000076_160 Hb_033834_030 Hb_033834_030 Hb_006916_040--Hb_033834_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93639 5.39755 6.93249 5.58284 10.8183 7.60803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.36028 6.16454 1.44819 3.23787 1.32411

CAGE analysis