Hb_000313_320

Information

Type -
Description -
Location Contig313: 452972-455019
Sequence    

Annotation

kegg
ID rcu:RCOM_1091380
description serine/threonine protein kinase, putative (EC:2.7.11.13)
nr
ID XP_012075668.1
description PREDICTED: protein kinase PINOID [Jatropha curcas]
swissprot
ID O64682
description Protein kinase PINOID OS=Arabidopsis thaliana GN=PID PE=1 SV=1
trembl
ID A0A067KIX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09256 PE=4 SV=1
Gene Ontology
ID GO:0009986
description protein kinase pinoid

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33160: 452760-454822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_320 0.0 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
2 Hb_095471_010 0.1811736525 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
3 Hb_000186_100 0.2016859834 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
4 Hb_000101_180 0.2041695204 - - -
5 Hb_000258_150 0.217472286 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
6 Hb_123104_010 0.2270276189 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
7 Hb_002388_060 0.2279452961 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000046_410 0.229894856 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
9 Hb_002450_110 0.2323850981 - - PREDICTED: geraniol 8-hydroxylase-like [Beta vulgaris subsp. vulgaris]
10 Hb_012384_050 0.2339642697 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
11 Hb_000365_260 0.2369161101 - - conserved hypothetical protein [Ricinus communis]
12 Hb_085226_010 0.2369413963 - - hypothetical protein POPTR_0002s03930g [Populus trichocarpa]
13 Hb_017111_010 0.2374928831 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
14 Hb_003687_200 0.2416038366 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
15 Hb_129067_010 0.2425862571 - - Cytochrome P450 superfamily protein [Theobroma cacao]
16 Hb_032264_130 0.2428121068 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
17 Hb_003654_010 0.2453659065 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
18 Hb_000815_100 0.2483208049 - - -
19 Hb_001632_010 0.2485830235 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
20 Hb_000605_010 0.2506567709 - - hypothetical protein JCGZ_05865 [Jatropha curcas]

Gene co-expression network

sample Hb_000313_320 Hb_000313_320 Hb_095471_010 Hb_095471_010 Hb_000313_320--Hb_095471_010 Hb_000186_100 Hb_000186_100 Hb_000313_320--Hb_000186_100 Hb_000101_180 Hb_000101_180 Hb_000313_320--Hb_000101_180 Hb_000258_150 Hb_000258_150 Hb_000313_320--Hb_000258_150 Hb_123104_010 Hb_123104_010 Hb_000313_320--Hb_123104_010 Hb_002388_060 Hb_002388_060 Hb_000313_320--Hb_002388_060 Hb_129067_010 Hb_129067_010 Hb_095471_010--Hb_129067_010 Hb_000365_260 Hb_000365_260 Hb_095471_010--Hb_000365_260 Hb_000465_120 Hb_000465_120 Hb_095471_010--Hb_000465_120 Hb_000815_100 Hb_000815_100 Hb_095471_010--Hb_000815_100 Hb_032264_130 Hb_032264_130 Hb_095471_010--Hb_032264_130 Hb_017111_010 Hb_017111_010 Hb_000186_100--Hb_017111_010 Hb_000186_100--Hb_002388_060 Hb_007545_210 Hb_007545_210 Hb_000186_100--Hb_007545_210 Hb_040506_010 Hb_040506_010 Hb_000186_100--Hb_040506_010 Hb_003687_200 Hb_003687_200 Hb_000186_100--Hb_003687_200 Hb_000186_100--Hb_032264_130 Hb_000101_180--Hb_017111_010 Hb_000101_180--Hb_000186_100 Hb_085892_020 Hb_085892_020 Hb_000101_180--Hb_085892_020 Hb_000101_180--Hb_123104_010 Hb_000605_010 Hb_000605_010 Hb_000101_180--Hb_000605_010 Hb_010560_060 Hb_010560_060 Hb_000258_150--Hb_010560_060 Hb_022174_010 Hb_022174_010 Hb_000258_150--Hb_022174_010 Hb_003654_010 Hb_003654_010 Hb_000258_150--Hb_003654_010 Hb_000258_150--Hb_000365_260 Hb_004007_160 Hb_004007_160 Hb_000258_150--Hb_004007_160 Hb_000098_020 Hb_000098_020 Hb_000258_150--Hb_000098_020 Hb_123104_010--Hb_000186_100 Hb_002307_050 Hb_002307_050 Hb_123104_010--Hb_002307_050 Hb_123104_010--Hb_017111_010 Hb_002007_290 Hb_002007_290 Hb_123104_010--Hb_002007_290 Hb_002388_060--Hb_007545_210 Hb_000523_020 Hb_000523_020 Hb_002388_060--Hb_000523_020 Hb_000416_100 Hb_000416_100 Hb_002388_060--Hb_000416_100 Hb_000270_400 Hb_000270_400 Hb_002388_060--Hb_000270_400 Hb_002388_060--Hb_032264_130 Hb_001454_390 Hb_001454_390 Hb_002388_060--Hb_001454_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.9127 0.647599 2.23583 4.10369 8.54834 5.75073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.66836 1.14901 4.15477 2.28491 1.11449

CAGE analysis