Hb_000313_330

Information

Type -
Description -
Location Contig313: 467939-468699
Sequence    

Annotation

kegg
ID egr:104417805
description glucan endo-1,3-beta-glucosidase 2
nr
ID XP_012075667.1
description PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
swissprot
ID Q9FJU9
description Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1
trembl
ID A0A067KFR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09255 PE=4 SV=1
Gene Ontology
ID GO:0004673
description carbohydrate-binding x8 domain superfamily protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33161: 467816-469141
cDNA
(Sanger)
(ID:Location)		 041_B18.ab1: 467816-469010 , 052_D02.ab1: 467816-469022

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_330 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
2 Hb_067118_010 0.1505234069 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
3 Hb_000375_140 0.1966209151 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
4 Hb_002374_540 0.2122693548 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
5 Hb_003713_010 0.2331793017 - - conserved hypothetical protein [Ricinus communis]
6 Hb_146255_010 0.2423470173 - - PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas]
7 Hb_006663_110 0.2494355834 - - PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
8 Hb_001269_100 0.2647816989 - - plasma membrane ATPase 1, partial [Triticum aestivum]
9 Hb_001391_050 0.2691760818 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
10 Hb_001741_110 0.2695410733 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
11 Hb_004064_030 0.2705906831 - - aldose-1-epimerase, putative [Ricinus communis]
12 Hb_002164_010 0.2708878579 - - Stellacyanin, putative [Ricinus communis]
13 Hb_000313_080 0.2768323248 rubber biosynthesis Gene Name: CPT3 cis-prenyltransferase 3 [Hevea brasiliensis]
14 Hb_001369_680 0.2792751622 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
15 Hb_001396_270 0.2832968937 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
16 Hb_001688_090 0.2856969379 - - alcohol dehydrogenase 7 [Vitis vinifera]
17 Hb_003536_090 0.286514118 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_071079_060 0.289241707 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
19 Hb_114310_030 0.2911754343 - - JHL18I08.8 [Jatropha curcas]
20 Hb_000500_070 0.2936248872 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]

Gene co-expression network

sample Hb_000313_330 Hb_000313_330 Hb_067118_010 Hb_067118_010 Hb_000313_330--Hb_067118_010 Hb_000375_140 Hb_000375_140 Hb_000313_330--Hb_000375_140 Hb_002374_540 Hb_002374_540 Hb_000313_330--Hb_002374_540 Hb_003713_010 Hb_003713_010 Hb_000313_330--Hb_003713_010 Hb_146255_010 Hb_146255_010 Hb_000313_330--Hb_146255_010 Hb_006663_110 Hb_006663_110 Hb_000313_330--Hb_006663_110 Hb_067118_010--Hb_000375_140 Hb_006061_030 Hb_006061_030 Hb_067118_010--Hb_006061_030 Hb_067118_010--Hb_003713_010 Hb_067118_010--Hb_146255_010 Hb_067118_010--Hb_002374_540 Hb_002164_010 Hb_002164_010 Hb_000375_140--Hb_002164_010 Hb_002774_120 Hb_002774_120 Hb_000375_140--Hb_002774_120 Hb_002003_090 Hb_002003_090 Hb_000375_140--Hb_002003_090 Hb_107658_010 Hb_107658_010 Hb_000375_140--Hb_107658_010 Hb_003536_090 Hb_003536_090 Hb_000375_140--Hb_003536_090 Hb_002374_540--Hb_146255_010 Hb_001741_110 Hb_001741_110 Hb_002374_540--Hb_001741_110 Hb_000313_080 Hb_000313_080 Hb_002374_540--Hb_000313_080 Hb_000087_010 Hb_000087_010 Hb_002374_540--Hb_000087_010 Hb_001396_270 Hb_001396_270 Hb_002374_540--Hb_001396_270 Hb_005357_170 Hb_005357_170 Hb_002374_540--Hb_005357_170 Hb_000500_070 Hb_000500_070 Hb_003713_010--Hb_000500_070 Hb_001232_060 Hb_001232_060 Hb_003713_010--Hb_001232_060 Hb_000815_220 Hb_000815_220 Hb_003713_010--Hb_000815_220 Hb_000160_010 Hb_000160_010 Hb_003713_010--Hb_000160_010 Hb_000139_110 Hb_000139_110 Hb_003713_010--Hb_000139_110 Hb_146255_010--Hb_000313_080 Hb_001887_010 Hb_001887_010 Hb_146255_010--Hb_001887_010 Hb_000392_060 Hb_000392_060 Hb_146255_010--Hb_000392_060 Hb_003685_070 Hb_003685_070 Hb_146255_010--Hb_003685_070 Hb_146255_010--Hb_006061_030 Hb_183671_010 Hb_183671_010 Hb_006663_110--Hb_183671_010 Hb_001369_680 Hb_001369_680 Hb_006663_110--Hb_001369_680 Hb_115832_010 Hb_115832_010 Hb_006663_110--Hb_115832_010 Hb_001688_090 Hb_001688_090 Hb_006663_110--Hb_001688_090 Hb_001391_050 Hb_001391_050 Hb_006663_110--Hb_001391_050 Hb_005601_030 Hb_005601_030 Hb_006663_110--Hb_005601_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04292 0.185449 0.505805 3.45416 0 0.0793067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.282946

CAGE analysis