Hb_000313_340

Information

Type -
Description -
Location Contig313: 486476-504280
Sequence    

Annotation

kegg
ID rcu:RCOM_1091910
description DNA repair protein xp-E, putative
nr
ID XP_002526608.1
description DNA repair protein xp-E, putative [Ricinus communis]
swissprot
ID Q6QNU4
description DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1
trembl
ID B9SKT9
description DNA repair protein xp-E, putative OS=Ricinus communis GN=RCOM_1091910 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna damage-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33162: 498593-500383 , PASA_asmbl_33164: 504157-504400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_340 0.0 - - DNA repair protein xp-E, putative [Ricinus communis]
2 Hb_140049_020 0.0505275018 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
3 Hb_001946_300 0.0590816045 - - PREDICTED: F-box protein At-B [Jatropha curcas]
4 Hb_007885_070 0.0650908424 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
5 Hb_004899_070 0.065991002 - - PREDICTED: RRP12-like protein [Jatropha curcas]
6 Hb_000261_290 0.0664284122 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
7 Hb_000363_130 0.0666820243 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
8 Hb_147737_010 0.071258281 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
9 Hb_000417_160 0.0732015028 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
10 Hb_000107_530 0.0753775851 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_000098_130 0.0771840534 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
12 Hb_005539_190 0.0778186386 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
13 Hb_003540_160 0.0801485366 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
14 Hb_019153_020 0.081345659 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
15 Hb_004970_160 0.0815740981 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
16 Hb_000813_100 0.0817039397 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
17 Hb_007229_040 0.0817855861 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
18 Hb_006588_050 0.0818090018 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
19 Hb_003866_020 0.0825225203 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000329_130 0.0830113458 - - beta-tubulin cofactor d, putative [Ricinus communis]

Gene co-expression network

sample Hb_000313_340 Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_000313_340--Hb_140049_020 Hb_001946_300 Hb_001946_300 Hb_000313_340--Hb_001946_300 Hb_007885_070 Hb_007885_070 Hb_000313_340--Hb_007885_070 Hb_004899_070 Hb_004899_070 Hb_000313_340--Hb_004899_070 Hb_000261_290 Hb_000261_290 Hb_000313_340--Hb_000261_290 Hb_000363_130 Hb_000363_130 Hb_000313_340--Hb_000363_130 Hb_019153_020 Hb_019153_020 Hb_140049_020--Hb_019153_020 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_140049_020--Hb_000363_130 Hb_001946_300--Hb_000363_130 Hb_001946_300--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_001946_300--Hb_147737_010 Hb_032202_240 Hb_032202_240 Hb_001946_300--Hb_032202_240 Hb_000504_160 Hb_000504_160 Hb_001946_300--Hb_000504_160 Hb_002221_050 Hb_002221_050 Hb_007885_070--Hb_002221_050 Hb_000417_160 Hb_000417_160 Hb_007885_070--Hb_000417_160 Hb_000529_260 Hb_000529_260 Hb_007885_070--Hb_000529_260 Hb_007885_070--Hb_019153_020 Hb_000320_380 Hb_000320_380 Hb_007885_070--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_007885_070--Hb_000424_010 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_000261_290--Hb_000098_130 Hb_000261_290--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_000261_290--Hb_003097_180 Hb_006588_050 Hb_006588_050 Hb_000261_290--Hb_006588_050 Hb_000865_080 Hb_000865_080 Hb_000363_130--Hb_000865_080 Hb_030565_090 Hb_030565_090 Hb_000363_130--Hb_030565_090 Hb_000136_090 Hb_000136_090 Hb_000363_130--Hb_000136_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.4421 37.3548 15.3 12.0415 50.3699 43.6565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3515 9.15023 15.4975 18.4964 10.8503

CAGE analysis