Hb_000313_380

Information

Type -
Description -
Location Contig313: 554585-568353
Sequence    

Annotation

kegg
ID rcu:RCOM_1092540
description hypothetical protein
nr
ID XP_002526611.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKU2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1092540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33169: 554709-566951 , PASA_asmbl_33173: 567951-568309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_380 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000809_040 0.0695910993 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
3 Hb_001366_230 0.074126235 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001366_220 0.0754708373 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002662_100 0.0805456618 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
6 Hb_009026_050 0.0847296239 - - vacuolar ATPase F subunit [Hevea brasiliensis]
7 Hb_021068_050 0.0867886496 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
8 Hb_000282_060 0.0880653728 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
9 Hb_000771_140 0.0887791769 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
10 Hb_001191_100 0.0929286892 - - F-actin capping protein beta subunit [Populus trichocarpa]
11 Hb_000956_010 0.0938758978 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
12 Hb_001981_090 0.0947517393 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
13 Hb_002025_320 0.0960462165 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
14 Hb_000856_340 0.0961113503 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
15 Hb_098709_010 0.0966958346 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
16 Hb_008695_190 0.0972683325 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
17 Hb_000173_170 0.1006714895 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
18 Hb_000376_050 0.1008967205 - - polyadenylate-binding protein, putative [Ricinus communis]
19 Hb_025087_010 0.1018121965 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
20 Hb_026988_020 0.1018191288 - - outward rectifying K+ channel [Hevea brasiliensis]

Gene co-expression network

sample Hb_000313_380 Hb_000313_380 Hb_000809_040 Hb_000809_040 Hb_000313_380--Hb_000809_040 Hb_001366_230 Hb_001366_230 Hb_000313_380--Hb_001366_230 Hb_001366_220 Hb_001366_220 Hb_000313_380--Hb_001366_220 Hb_002662_100 Hb_002662_100 Hb_000313_380--Hb_002662_100 Hb_009026_050 Hb_009026_050 Hb_000313_380--Hb_009026_050 Hb_021068_050 Hb_021068_050 Hb_000313_380--Hb_021068_050 Hb_000809_040--Hb_001366_220 Hb_001981_090 Hb_001981_090 Hb_000809_040--Hb_001981_090 Hb_004882_020 Hb_004882_020 Hb_000809_040--Hb_004882_020 Hb_000085_310 Hb_000085_310 Hb_000809_040--Hb_000085_310 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_001191_100 Hb_001191_100 Hb_001366_230--Hb_001191_100 Hb_025087_010 Hb_025087_010 Hb_001366_230--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_001366_230--Hb_183963_020 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020 Hb_000387_080 Hb_000387_080 Hb_001366_220--Hb_000387_080 Hb_001366_220--Hb_000085_310 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040 Hb_002662_100--Hb_001366_220 Hb_002662_100--Hb_000085_310 Hb_002662_100--Hb_000809_040 Hb_002662_100--Hb_009026_050 Hb_002662_100--Hb_001366_230 Hb_000089_130 Hb_000089_130 Hb_009026_050--Hb_000089_130 Hb_009026_050--Hb_025087_010 Hb_009026_050--Hb_001366_230 Hb_002025_320 Hb_002025_320 Hb_009026_050--Hb_002025_320 Hb_009026_050--Hb_183963_020 Hb_000376_050 Hb_000376_050 Hb_021068_050--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_021068_050--Hb_002603_100 Hb_024835_030 Hb_024835_030 Hb_021068_050--Hb_024835_030 Hb_022250_040 Hb_022250_040 Hb_021068_050--Hb_022250_040 Hb_004012_010 Hb_004012_010 Hb_021068_050--Hb_004012_010 Hb_026198_050 Hb_026198_050 Hb_021068_050--Hb_026198_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.6002 13.6175 3.11591 9.05051 53.7537 56.9234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.9579 57.855 61.4413 8.90156 3.66999

CAGE analysis