Hb_000315_030

Information

Type -
Description -
Location Contig315: 64299-66323
Sequence    

Annotation

kegg
ID rcu:RCOM_0072320
description carbohydrate binding protein, putative (EC:2.7.11.22)
nr
ID XP_002531545.1
description carbohydrate binding protein, putative [Ricinus communis]
swissprot
ID Q9SZD5
description L-type lectin-domain containing receptor kinase V.9 OS=Arabidopsis thaliana GN=LECRK59 PE=2 SV=1
trembl
ID B9SZX6
description Carbohydrate binding protein, putative OS=Ricinus communis GN=RCOM_0072320 PE=3 SV=1
Gene Ontology
ID GO:0005886
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000315_030 0.0 - - carbohydrate binding protein, putative [Ricinus communis]
2 Hb_001351_040 0.1699849636 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
3 Hb_003384_070 0.1770748724 - - PREDICTED: methylesterase 17-like [Populus euphratica]
4 Hb_000061_380 0.2087412606 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003640_030 0.2119989868 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
6 Hb_000640_150 0.2127323258 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
7 Hb_002477_220 0.2264101547 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
8 Hb_012404_040 0.2289011228 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
9 Hb_134894_010 0.23942534 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
10 Hb_002903_130 0.2436504745 - - epoxide hydrolase, putative [Ricinus communis]
11 Hb_184705_010 0.2449999342 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
12 Hb_000977_010 0.2455061262 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
13 Hb_000283_150 0.2458886459 - - Ankyrin repeat family protein [Theobroma cacao]
14 Hb_007785_010 0.2527805613 - - glutathione peroxidase, putative [Ricinus communis]
15 Hb_001269_040 0.2528667591 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_007144_010 0.2539806558 - - -
17 Hb_000097_040 0.2541264465 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
18 Hb_000083_130 0.2561436342 - - hypothetical protein RCOM_0884570 [Ricinus communis]
19 Hb_001091_030 0.2564028793 - - hypothetical protein AALP_AA1G173500 [Arabis alpina]
20 Hb_000958_030 0.2566581159 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_000315_030 Hb_000315_030 Hb_001351_040 Hb_001351_040 Hb_000315_030--Hb_001351_040 Hb_003384_070 Hb_003384_070 Hb_000315_030--Hb_003384_070 Hb_000061_380 Hb_000061_380 Hb_000315_030--Hb_000061_380 Hb_003640_030 Hb_003640_030 Hb_000315_030--Hb_003640_030 Hb_000640_150 Hb_000640_150 Hb_000315_030--Hb_000640_150 Hb_002477_220 Hb_002477_220 Hb_000315_030--Hb_002477_220 Hb_000977_010 Hb_000977_010 Hb_001351_040--Hb_000977_010 Hb_010398_010 Hb_010398_010 Hb_001351_040--Hb_010398_010 Hb_048848_010 Hb_048848_010 Hb_001351_040--Hb_048848_010 Hb_001351_040--Hb_003384_070 Hb_001351_040--Hb_003640_030 Hb_011382_050 Hb_011382_050 Hb_003384_070--Hb_011382_050 Hb_141142_010 Hb_141142_010 Hb_003384_070--Hb_141142_010 Hb_101089_010 Hb_101089_010 Hb_003384_070--Hb_101089_010 Hb_000803_100 Hb_000803_100 Hb_003384_070--Hb_000803_100 Hb_000061_380--Hb_003640_030 Hb_002903_130 Hb_002903_130 Hb_000061_380--Hb_002903_130 Hb_000283_150 Hb_000283_150 Hb_000061_380--Hb_000283_150 Hb_000061_380--Hb_048848_010 Hb_020178_060 Hb_020178_060 Hb_000061_380--Hb_020178_060 Hb_003640_030--Hb_002903_130 Hb_000362_110 Hb_000362_110 Hb_003640_030--Hb_000362_110 Hb_003640_030--Hb_020178_060 Hb_003640_030--Hb_000283_150 Hb_003640_030--Hb_000977_010 Hb_012404_040 Hb_012404_040 Hb_000640_150--Hb_012404_040 Hb_000270_210 Hb_000270_210 Hb_000640_150--Hb_000270_210 Hb_000003_390 Hb_000003_390 Hb_000640_150--Hb_000003_390 Hb_007846_040 Hb_007846_040 Hb_000640_150--Hb_007846_040 Hb_010261_010 Hb_010261_010 Hb_000640_150--Hb_010261_010 Hb_003157_010 Hb_003157_010 Hb_000640_150--Hb_003157_010 Hb_002477_220--Hb_000283_150 Hb_007380_040 Hb_007380_040 Hb_002477_220--Hb_007380_040 Hb_000406_060 Hb_000406_060 Hb_002477_220--Hb_000406_060 Hb_000022_170 Hb_000022_170 Hb_002477_220--Hb_000022_170 Hb_002477_220--Hb_003640_030 Hb_001636_020 Hb_001636_020 Hb_002477_220--Hb_001636_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2486 17.5284 0.334502 5.56502 6.69951 9.16472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.200337 0.192661 0 28.8237 1.25896

CAGE analysis