Hb_000315_120

Information

Type -
Description -
Location Contig315: 252765-256580
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33236: 252881-253310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000315_120 0.0 - - -
2 Hb_001518_040 0.1158664282 - - PREDICTED: G patch domain-containing protein 11 [Populus euphratica]
3 Hb_001235_210 0.1164707767 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_006816_150 0.1207895884 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
5 Hb_011805_080 0.1216838487 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
6 Hb_008578_010 0.1240458235 - - 30S ribosomal protein S19, putative [Ricinus communis]
7 Hb_143813_010 0.1243245649 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
8 Hb_011828_050 0.1244205721 - - 40S ribosomal protein S23, putative [Ricinus communis]
9 Hb_001477_110 0.1246001694 - - prohibitin, putative [Ricinus communis]
10 Hb_043302_010 0.1248026011 - - ADP,ATP carrier protein, putative [Ricinus communis]
11 Hb_007747_090 0.1278901549 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
12 Hb_003376_320 0.1280481484 - - 60S ribosomal protein L12A [Hevea brasiliensis]
13 Hb_001221_230 0.1322713204 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002659_070 0.1327376365 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
15 Hb_000261_260 0.1330443934 - - PREDICTED: LOW QUALITY PROTEIN: HBS1-like protein [Populus euphratica]
16 Hb_010810_050 0.1349240191 - - hypothetical protein [Cleome spinosa]
17 Hb_004724_190 0.1358980155 - - NITRILASE-LIKE protein 1 [Populus trichocarpa]
18 Hb_001789_240 0.1380588704 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
19 Hb_003097_150 0.1385782075 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
20 Hb_114343_010 0.1402111157 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]

Gene co-expression network

sample Hb_000315_120 Hb_000315_120 Hb_001518_040 Hb_001518_040 Hb_000315_120--Hb_001518_040 Hb_001235_210 Hb_001235_210 Hb_000315_120--Hb_001235_210 Hb_006816_150 Hb_006816_150 Hb_000315_120--Hb_006816_150 Hb_011805_080 Hb_011805_080 Hb_000315_120--Hb_011805_080 Hb_008578_010 Hb_008578_010 Hb_000315_120--Hb_008578_010 Hb_143813_010 Hb_143813_010 Hb_000315_120--Hb_143813_010 Hb_029510_140 Hb_029510_140 Hb_001518_040--Hb_029510_140 Hb_000384_090 Hb_000384_090 Hb_001518_040--Hb_000384_090 Hb_000617_020 Hb_000617_020 Hb_001518_040--Hb_000617_020 Hb_060809_010 Hb_060809_010 Hb_001518_040--Hb_060809_010 Hb_003005_020 Hb_003005_020 Hb_001518_040--Hb_003005_020 Hb_003097_150 Hb_003097_150 Hb_001518_040--Hb_003097_150 Hb_001477_110 Hb_001477_110 Hb_001235_210--Hb_001477_110 Hb_004645_050 Hb_004645_050 Hb_001235_210--Hb_004645_050 Hb_000580_080 Hb_000580_080 Hb_001235_210--Hb_000580_080 Hb_002311_350 Hb_002311_350 Hb_001235_210--Hb_002311_350 Hb_001824_070 Hb_001824_070 Hb_001235_210--Hb_001824_070 Hb_000380_190 Hb_000380_190 Hb_001235_210--Hb_000380_190 Hb_002784_040 Hb_002784_040 Hb_006816_150--Hb_002784_040 Hb_010810_050 Hb_010810_050 Hb_006816_150--Hb_010810_050 Hb_006816_150--Hb_008578_010 Hb_000019_230 Hb_000019_230 Hb_006816_150--Hb_000019_230 Hb_001369_650 Hb_001369_650 Hb_006816_150--Hb_001369_650 Hb_003120_060 Hb_003120_060 Hb_006816_150--Hb_003120_060 Hb_003001_060 Hb_003001_060 Hb_011805_080--Hb_003001_060 Hb_007617_020 Hb_007617_020 Hb_011805_080--Hb_007617_020 Hb_011805_080--Hb_001369_650 Hb_002893_060 Hb_002893_060 Hb_011805_080--Hb_002893_060 Hb_007747_090 Hb_007747_090 Hb_011805_080--Hb_007747_090 Hb_003878_190 Hb_003878_190 Hb_011805_080--Hb_003878_190 Hb_008578_010--Hb_002784_040 Hb_001021_230 Hb_001021_230 Hb_008578_010--Hb_001021_230 Hb_000742_140 Hb_000742_140 Hb_008578_010--Hb_000742_140 Hb_000098_190 Hb_000098_190 Hb_008578_010--Hb_000098_190 Hb_008578_010--Hb_001369_650 Hb_143813_010--Hb_007747_090 Hb_000510_090 Hb_000510_090 Hb_143813_010--Hb_000510_090 Hb_001246_100 Hb_001246_100 Hb_143813_010--Hb_001246_100 Hb_143813_010--Hb_003120_060 Hb_143813_010--Hb_000019_230 Hb_001221_230 Hb_001221_230 Hb_143813_010--Hb_001221_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13014 0.777196 0.47153 0.880594 3.08158 4.36041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64784 4.82444 0.99915 1.80642 0.666604

CAGE analysis