Hb_000316_020

Information

Type -
Description -
Location Contig316: 4581-5357
Sequence    

Annotation

kegg
ID rcu:RCOM_1206820
description protein binding protein, putative
nr
ID XP_002530848.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SXZ1
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1206820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000316_020 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000161_150 0.1398725217 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
3 Hb_009314_010 0.1629865099 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
4 Hb_000771_130 0.1635124529 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
5 Hb_000432_050 0.1768812026 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
6 Hb_003754_080 0.1933714782 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
7 Hb_001538_140 0.1952008392 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
8 Hb_001114_050 0.198576335 - - hypothetical protein RCOM_0744580 [Ricinus communis]
9 Hb_000454_070 0.1996270614 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
10 Hb_002756_020 0.2020979825 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
11 Hb_003913_080 0.2028426492 - - rpl27A [Hemiselmis andersenii]
12 Hb_005224_010 0.2085287093 - - glycine-rich protein [Bruguiera gymnorhiza]
13 Hb_000016_190 0.2108257033 - - ABC transporter B family member 28 [Glycine soja]
14 Hb_002138_010 0.2109982449 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
15 Hb_012239_100 0.2121110082 - - hypothetical protein VITISV_043897 [Vitis vinifera]
16 Hb_000723_190 0.2127555596 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
17 Hb_000731_250 0.2136042442 - - -
18 Hb_003209_200 0.2155222213 transcription factor TF Family: WRKY hypothetical protein RCOM_1621230 [Ricinus communis]
19 Hb_000616_040 0.2156647025 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
20 Hb_029510_040 0.2170973433 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]

Gene co-expression network

sample Hb_000316_020 Hb_000316_020 Hb_000161_150 Hb_000161_150 Hb_000316_020--Hb_000161_150 Hb_009314_010 Hb_009314_010 Hb_000316_020--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000316_020--Hb_000771_130 Hb_000432_050 Hb_000432_050 Hb_000316_020--Hb_000432_050 Hb_003754_080 Hb_003754_080 Hb_000316_020--Hb_003754_080 Hb_001538_140 Hb_001538_140 Hb_000316_020--Hb_001538_140 Hb_000161_150--Hb_009314_010 Hb_000161_150--Hb_000771_130 Hb_002756_020 Hb_002756_020 Hb_000161_150--Hb_002756_020 Hb_000141_030 Hb_000141_030 Hb_000161_150--Hb_000141_030 Hb_000161_150--Hb_000432_050 Hb_009314_010--Hb_000432_050 Hb_006816_450 Hb_006816_450 Hb_009314_010--Hb_006816_450 Hb_009314_010--Hb_002756_020 Hb_005224_010 Hb_005224_010 Hb_009314_010--Hb_005224_010 Hb_009314_010--Hb_000771_130 Hb_000016_190 Hb_000016_190 Hb_000771_130--Hb_000016_190 Hb_000771_130--Hb_000432_050 Hb_005839_110 Hb_005839_110 Hb_000771_130--Hb_005839_110 Hb_000562_040 Hb_000562_040 Hb_000771_130--Hb_000562_040 Hb_000432_050--Hb_001538_140 Hb_029510_040 Hb_029510_040 Hb_000432_050--Hb_029510_040 Hb_000432_050--Hb_005839_110 Hb_000432_050--Hb_002756_020 Hb_003754_080--Hb_000161_150 Hb_003754_080--Hb_000771_130 Hb_008516_040 Hb_008516_040 Hb_003754_080--Hb_008516_040 Hb_003913_080 Hb_003913_080 Hb_003754_080--Hb_003913_080 Hb_004208_100 Hb_004208_100 Hb_003754_080--Hb_004208_100 Hb_003147_050 Hb_003147_050 Hb_001538_140--Hb_003147_050 Hb_002290_040 Hb_002290_040 Hb_001538_140--Hb_002290_040 Hb_005614_050 Hb_005614_050 Hb_001538_140--Hb_005614_050 Hb_000363_200 Hb_000363_200 Hb_001538_140--Hb_000363_200 Hb_002078_460 Hb_002078_460 Hb_001538_140--Hb_002078_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.282091 0.266762 0.0473076 0.137826 0.600006 0.316283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.66619 2.4825 5.37395 2.88347 0.331232

CAGE analysis