Hb_000316_030

Information

Type -
Description -
Location Contig316: 7493-8557
Sequence    

Annotation

kegg
ID rcu:RCOM_1086480
description zinc finger protein, putative
nr
ID XP_002524993.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8K339
description DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1
trembl
ID B9SG74
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1086480 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna rna-binding protein kin17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33299: 7514-8149
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000316_030 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001040_160 0.0625345454 - - glutaredoxin, grx, putative [Ricinus communis]
3 Hb_003434_060 0.0685742736 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
4 Hb_000390_060 0.0693584811 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
5 Hb_001609_010 0.0716723958 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
6 Hb_063047_010 0.0751289725 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
7 Hb_002097_090 0.0761696098 - - Splicing factor 3A subunit, putative [Ricinus communis]
8 Hb_025012_010 0.0788542262 - - PREDICTED: importin-4 [Vitis vinifera]
9 Hb_000370_030 0.0802116976 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
10 Hb_004619_050 0.0816467885 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
11 Hb_002716_140 0.0818577795 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
12 Hb_001866_110 0.0823150174 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
13 Hb_002027_270 0.0834769526 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
14 Hb_000184_130 0.083835208 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
15 Hb_000703_080 0.0850689137 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
16 Hb_008714_020 0.0855393518 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
17 Hb_000429_120 0.0855992118 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
18 Hb_001943_010 0.0856219287 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
19 Hb_000046_440 0.0856567062 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
20 Hb_005977_090 0.0857621376 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]

Gene co-expression network

sample Hb_000316_030 Hb_000316_030 Hb_001040_160 Hb_001040_160 Hb_000316_030--Hb_001040_160 Hb_003434_060 Hb_003434_060 Hb_000316_030--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000316_030--Hb_000390_060 Hb_001609_010 Hb_001609_010 Hb_000316_030--Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_000316_030--Hb_063047_010 Hb_002097_090 Hb_002097_090 Hb_000316_030--Hb_002097_090 Hb_008714_020 Hb_008714_020 Hb_001040_160--Hb_008714_020 Hb_001040_160--Hb_001609_010 Hb_001040_160--Hb_063047_010 Hb_005635_010 Hb_005635_010 Hb_001040_160--Hb_005635_010 Hb_025012_010 Hb_025012_010 Hb_001040_160--Hb_025012_010 Hb_003434_060--Hb_000390_060 Hb_000956_030 Hb_000956_030 Hb_003434_060--Hb_000956_030 Hb_000120_500 Hb_000120_500 Hb_003434_060--Hb_000120_500 Hb_004198_010 Hb_004198_010 Hb_003434_060--Hb_004198_010 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_000230_330 Hb_000230_330 Hb_000390_060--Hb_000230_330 Hb_000390_060--Hb_000120_500 Hb_001584_110 Hb_001584_110 Hb_000390_060--Hb_001584_110 Hb_000034_050 Hb_000034_050 Hb_000390_060--Hb_000034_050 Hb_001609_010--Hb_063047_010 Hb_001871_040 Hb_001871_040 Hb_001609_010--Hb_001871_040 Hb_004881_050 Hb_004881_050 Hb_001609_010--Hb_004881_050 Hb_000457_060 Hb_000457_060 Hb_001609_010--Hb_000457_060 Hb_063047_010--Hb_001871_040 Hb_110364_010 Hb_110364_010 Hb_063047_010--Hb_110364_010 Hb_063047_010--Hb_004881_050 Hb_000684_420 Hb_000684_420 Hb_002097_090--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_002097_090--Hb_000645_150 Hb_004934_090 Hb_004934_090 Hb_002097_090--Hb_004934_090 Hb_000076_080 Hb_000076_080 Hb_002097_090--Hb_000076_080 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_000803_300 Hb_000803_300 Hb_002097_090--Hb_000803_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.0192 15.8673 4.73033 11.5551 31.2986 53.829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2688 13.6433 16.899 14.8367 12.425

CAGE analysis