Hb_000316_050

Information

Type -
Description -
Location Contig316: 21072-25482
Sequence    

Annotation

kegg
ID rcu:RCOM_1206840
description Synaptic glycoprotein SC2, putative (EC:1.3.99.5)
nr
ID AHI86054.1
description enoyl-ACP reductase [Vernicia fordii]
swissprot
ID Q9M2U2
description Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana GN=ECR PE=1 SV=1
trembl
ID W6CJG3
description Enoyl-ACP reductase OS=Vernicia fordii GN=EAR PE=2 SV=1
Gene Ontology
ID GO:0005886
description very-long-chain enoyl- reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33301: 21052-25100 , PASA_asmbl_33302: 22929-23114 , PASA_asmbl_33303: 22298-22693 , PASA_asmbl_33304: 21607-21802
cDNA
(Sanger)
(ID:Location)		 031_L09.ab1: 21597-24077 , 036_L01.ab1: 21052-23604 , 043_K09.ab1: 21597-24033

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000316_050 0.0 - - enoyl-ACP reductase [Vernicia fordii]
2 Hb_000096_090 0.0975587144 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
3 Hb_000236_070 0.1058852653 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001959_070 0.1092272608 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
5 Hb_000648_110 0.1099412987 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
6 Hb_000505_010 0.1119726212 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
7 Hb_000023_140 0.1167125741 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
8 Hb_002498_100 0.1187102691 - - bcr-associated protein, bap, putative [Ricinus communis]
9 Hb_011316_040 0.1205730431 - - peptidase, putative [Ricinus communis]
10 Hb_116349_100 0.1205790925 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
11 Hb_002496_050 0.1206067865 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
12 Hb_003376_040 0.1218090455 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
13 Hb_001053_180 0.1267409277 - - protein binding protein, putative [Ricinus communis]
14 Hb_009048_040 0.1277081362 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
15 Hb_006472_010 0.1287266529 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
16 Hb_000365_310 0.1292430168 - - auxin:hydrogen symporter, putative [Ricinus communis]
17 Hb_004109_190 0.1292563833 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
18 Hb_007672_050 0.1298886357 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
19 Hb_002054_010 0.1302471724 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
20 Hb_000029_030 0.13035518 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]

Gene co-expression network

sample Hb_000316_050 Hb_000316_050 Hb_000096_090 Hb_000096_090 Hb_000316_050--Hb_000096_090 Hb_000236_070 Hb_000236_070 Hb_000316_050--Hb_000236_070 Hb_001959_070 Hb_001959_070 Hb_000316_050--Hb_001959_070 Hb_000648_110 Hb_000648_110 Hb_000316_050--Hb_000648_110 Hb_000505_010 Hb_000505_010 Hb_000316_050--Hb_000505_010 Hb_000023_140 Hb_000023_140 Hb_000316_050--Hb_000023_140 Hb_003376_040 Hb_003376_040 Hb_000096_090--Hb_003376_040 Hb_001396_180 Hb_001396_180 Hb_000096_090--Hb_001396_180 Hb_000096_090--Hb_000648_110 Hb_001053_180 Hb_001053_180 Hb_000096_090--Hb_001053_180 Hb_003732_020 Hb_003732_020 Hb_000096_090--Hb_003732_020 Hb_002205_070 Hb_002205_070 Hb_000236_070--Hb_002205_070 Hb_011316_040 Hb_011316_040 Hb_000236_070--Hb_011316_040 Hb_024185_020 Hb_024185_020 Hb_000236_070--Hb_024185_020 Hb_000107_620 Hb_000107_620 Hb_000236_070--Hb_000107_620 Hb_000236_070--Hb_000648_110 Hb_009838_080 Hb_009838_080 Hb_000236_070--Hb_009838_080 Hb_001348_180 Hb_001348_180 Hb_001959_070--Hb_001348_180 Hb_000173_290 Hb_000173_290 Hb_001959_070--Hb_000173_290 Hb_001100_060 Hb_001100_060 Hb_001959_070--Hb_001100_060 Hb_001959_070--Hb_002205_070 Hb_004837_030 Hb_004837_030 Hb_001959_070--Hb_004837_030 Hb_001959_070--Hb_000236_070 Hb_000648_110--Hb_011316_040 Hb_000648_110--Hb_024185_020 Hb_001277_330 Hb_001277_330 Hb_000648_110--Hb_001277_330 Hb_002687_110 Hb_002687_110 Hb_000648_110--Hb_002687_110 Hb_000409_020 Hb_000409_020 Hb_000648_110--Hb_000409_020 Hb_000505_010--Hb_001396_180 Hb_000505_010--Hb_011316_040 Hb_000505_010--Hb_000236_070 Hb_000505_010--Hb_003376_040 Hb_000505_010--Hb_000096_090 Hb_116349_100 Hb_116349_100 Hb_000505_010--Hb_116349_100 Hb_002616_050 Hb_002616_050 Hb_000023_140--Hb_002616_050 Hb_005754_060 Hb_005754_060 Hb_000023_140--Hb_005754_060 Hb_071736_010 Hb_071736_010 Hb_000023_140--Hb_071736_010 Hb_001855_010 Hb_001855_010 Hb_000023_140--Hb_001855_010 Hb_005063_040 Hb_005063_040 Hb_000023_140--Hb_005063_040 Hb_006788_070 Hb_006788_070 Hb_000023_140--Hb_006788_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
128.596 8.64468 27.7502 52.7412 100.67 138.619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
146.201 89.7628 135.851 23.88 80.2689

CAGE analysis