Hb_000316_070

Information

Type -
Description -
Location Contig316: 44440-46515
Sequence    

Annotation

kegg
ID csv:101214247
description actin-1-like
nr
ID XP_008458878.1
description PREDICTED: actin-1-like isoform X2 [Cucumis melo]
swissprot
ID Q10DV7
description Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1
trembl
ID A0A0A0KU98
description Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517100 PE=3 SV=1
Gene Ontology
ID GO:0005524
description actin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33306: 45792-46496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000316_070 0.0 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
2 Hb_011849_010 0.0606518834 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
3 Hb_004635_020 0.0634504169 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
4 Hb_004963_020 0.0655756785 - - PREDICTED: patellin-4 [Populus euphratica]
5 Hb_000614_200 0.0666719618 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
6 Hb_004032_390 0.0676451125 - - CDK, putative [Ricinus communis]
7 Hb_007245_030 0.0685129737 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001864_040 0.073478667 - - PREDICTED: kinesin-1 [Jatropha curcas]
9 Hb_002374_090 0.0750387055 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
10 Hb_001168_030 0.076599831 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
11 Hb_003776_050 0.0800871869 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
12 Hb_000189_350 0.0844259057 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
13 Hb_003398_050 0.0854122304 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
14 Hb_027905_040 0.0861548766 transcription factor TF Family: E2F-DP PREDICTED: E2F transcription factor-like E2FF [Jatropha curcas]
15 Hb_001220_020 0.087237008 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
16 Hb_119044_040 0.0872915958 - - cyclin B, putative [Ricinus communis]
17 Hb_080952_060 0.0874715874 - - PREDICTED: patellin-4 [Populus euphratica]
18 Hb_000038_070 0.0875065396 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002686_070 0.0875652753 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001699_070 0.0876912261 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000316_070 Hb_000316_070 Hb_011849_010 Hb_011849_010 Hb_000316_070--Hb_011849_010 Hb_004635_020 Hb_004635_020 Hb_000316_070--Hb_004635_020 Hb_004963_020 Hb_004963_020 Hb_000316_070--Hb_004963_020 Hb_000614_200 Hb_000614_200 Hb_000316_070--Hb_000614_200 Hb_004032_390 Hb_004032_390 Hb_000316_070--Hb_004032_390 Hb_007245_030 Hb_007245_030 Hb_000316_070--Hb_007245_030 Hb_011849_010--Hb_000614_200 Hb_003776_050 Hb_003776_050 Hb_011849_010--Hb_003776_050 Hb_002374_090 Hb_002374_090 Hb_011849_010--Hb_002374_090 Hb_000038_070 Hb_000038_070 Hb_011849_010--Hb_000038_070 Hb_119044_040 Hb_119044_040 Hb_011849_010--Hb_119044_040 Hb_000856_390 Hb_000856_390 Hb_004635_020--Hb_000856_390 Hb_000085_360 Hb_000085_360 Hb_004635_020--Hb_000085_360 Hb_080952_060 Hb_080952_060 Hb_004635_020--Hb_080952_060 Hb_004635_020--Hb_119044_040 Hb_004635_020--Hb_007245_030 Hb_002473_030 Hb_002473_030 Hb_004963_020--Hb_002473_030 Hb_001168_030 Hb_001168_030 Hb_004963_020--Hb_001168_030 Hb_001864_040 Hb_001864_040 Hb_004963_020--Hb_001864_040 Hb_002837_030 Hb_002837_030 Hb_004963_020--Hb_002837_030 Hb_005649_050 Hb_005649_050 Hb_004963_020--Hb_005649_050 Hb_000614_200--Hb_003776_050 Hb_000614_200--Hb_007245_030 Hb_000614_200--Hb_002374_090 Hb_000614_200--Hb_119044_040 Hb_003398_050 Hb_003398_050 Hb_000614_200--Hb_003398_050 Hb_001220_020 Hb_001220_020 Hb_004032_390--Hb_001220_020 Hb_004032_390--Hb_003398_050 Hb_162378_020 Hb_162378_020 Hb_004032_390--Hb_162378_020 Hb_004032_390--Hb_003776_050 Hb_002928_150 Hb_002928_150 Hb_004032_390--Hb_002928_150 Hb_004174_030 Hb_004174_030 Hb_004032_390--Hb_004174_030 Hb_005914_100 Hb_005914_100 Hb_007245_030--Hb_005914_100 Hb_007245_030--Hb_001168_030 Hb_007245_030--Hb_002928_150 Hb_004225_160 Hb_004225_160 Hb_007245_030--Hb_004225_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104196 0.663771 17.7626 6.17306 0.0601519 0.0306085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0366263 0.0288126 0 0.968065 0.838616

CAGE analysis