Hb_000317_020

Information

Type -
Description -
Location Contig317: 14800-19181
Sequence    

Annotation

kegg
ID rcu:RCOM_1176220
description hypothetical protein
nr
ID XP_012088344.1
description PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
swissprot
ID Q52KK4
description H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Rattus norvegicus GN=Naf1 PE=2 SV=1
trembl
ID A0A067JW23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25837 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33336: 14774-19104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_020 0.0 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
2 Hb_000152_820 0.050247729 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
3 Hb_001736_040 0.0581455468 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
4 Hb_002876_110 0.0605205267 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001975_160 0.0641106231 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000661_050 0.0663988163 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
7 Hb_004600_040 0.0683387581 - - -
8 Hb_010175_020 0.0751347045 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_007757_110 0.0767444167 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
10 Hb_002496_030 0.0770586856 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
11 Hb_004724_200 0.0790971003 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
12 Hb_175338_030 0.0792375982 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
13 Hb_015306_020 0.0796735327 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
14 Hb_000977_070 0.0807364972 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
15 Hb_000030_010 0.0809150869 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
16 Hb_000776_110 0.0809157119 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
17 Hb_002307_100 0.0809366862 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
18 Hb_000421_260 0.0810532882 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
19 Hb_000392_300 0.0822454039 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
20 Hb_001269_550 0.0825018115 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]

Gene co-expression network

sample Hb_000317_020 Hb_000317_020 Hb_000152_820 Hb_000152_820 Hb_000317_020--Hb_000152_820 Hb_001736_040 Hb_001736_040 Hb_000317_020--Hb_001736_040 Hb_002876_110 Hb_002876_110 Hb_000317_020--Hb_002876_110 Hb_001975_160 Hb_001975_160 Hb_000317_020--Hb_001975_160 Hb_000661_050 Hb_000661_050 Hb_000317_020--Hb_000661_050 Hb_004600_040 Hb_004600_040 Hb_000317_020--Hb_004600_040 Hb_010175_020 Hb_010175_020 Hb_000152_820--Hb_010175_020 Hb_007757_110 Hb_007757_110 Hb_000152_820--Hb_007757_110 Hb_000152_820--Hb_001736_040 Hb_000776_110 Hb_000776_110 Hb_000152_820--Hb_000776_110 Hb_001269_550 Hb_001269_550 Hb_000152_820--Hb_001269_550 Hb_001736_040--Hb_000661_050 Hb_002477_030 Hb_002477_030 Hb_001736_040--Hb_002477_030 Hb_000827_070 Hb_000827_070 Hb_001736_040--Hb_000827_070 Hb_000977_070 Hb_000977_070 Hb_001736_040--Hb_000977_070 Hb_002876_110--Hb_004600_040 Hb_006332_020 Hb_006332_020 Hb_002876_110--Hb_006332_020 Hb_004724_200 Hb_004724_200 Hb_002876_110--Hb_004724_200 Hb_002876_110--Hb_001736_040 Hb_000392_300 Hb_000392_300 Hb_002876_110--Hb_000392_300 Hb_001507_020 Hb_001507_020 Hb_001975_160--Hb_001507_020 Hb_013405_030 Hb_013405_030 Hb_001975_160--Hb_013405_030 Hb_001975_160--Hb_000776_110 Hb_001975_160--Hb_007757_110 Hb_001975_160--Hb_000152_820 Hb_002307_100 Hb_002307_100 Hb_000661_050--Hb_002307_100 Hb_000661_050--Hb_004724_200 Hb_000244_250 Hb_000244_250 Hb_000661_050--Hb_000244_250 Hb_004934_090 Hb_004934_090 Hb_000661_050--Hb_004934_090 Hb_000538_200 Hb_000538_200 Hb_004600_040--Hb_000538_200 Hb_000123_260 Hb_000123_260 Hb_004600_040--Hb_000123_260 Hb_000421_260 Hb_000421_260 Hb_004600_040--Hb_000421_260 Hb_003097_150 Hb_003097_150 Hb_004600_040--Hb_003097_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3713 12.0819 4.64194 7.07879 25.4026 22.6089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2062 17.9194 26.0627 11.9906 11.5743

CAGE analysis