Hb_000317_040

Information

Type -
Description -
Location Contig317: 33620-37984
Sequence    

Annotation

kegg
ID rcu:RCOM_1176250
description acetylglucosaminyltransferase, putative (EC:2.4.2.26)
nr
ID XP_012088347.1
description PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
swissprot
ID Q9EPI1
description Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1
trembl
ID A0A067JJW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25839 PE=4 SV=1
Gene Ontology
ID GO:0016020
description xylosyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33340: 34724-35582 , PASA_asmbl_33341: 33513-37983 , PASA_asmbl_33342: 35984-37413 , PASA_asmbl_33343: 35665-35895
cDNA
(Sanger)
(ID:Location)		 001_E19.ab1: 33513-34325

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_040 0.0 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
2 Hb_003777_200 0.063917127 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
3 Hb_000703_190 0.0673385176 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
4 Hb_019181_040 0.0685335709 - - component of oligomeric golgi complex, putative [Ricinus communis]
5 Hb_002326_040 0.0686739161 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
6 Hb_000046_500 0.0710106842 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
7 Hb_012506_030 0.0714998724 - - AP-2 complex subunit alpha, putative [Ricinus communis]
8 Hb_000260_460 0.0793548916 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
9 Hb_000856_040 0.079776379 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
10 Hb_079526_040 0.0822138057 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
11 Hb_001518_080 0.0823804519 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
12 Hb_002071_070 0.0825440496 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
13 Hb_001863_360 0.0832217636 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
14 Hb_003058_260 0.0848094823 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
15 Hb_002811_270 0.0857701842 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
16 Hb_012632_010 0.0880671672 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
17 Hb_001817_170 0.0881588383 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
18 Hb_000441_220 0.0889285721 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_001257_030 0.0890656747 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
20 Hb_000637_110 0.0891156808 - - hypothetical protein B456_013G081300 [Gossypium raimondii]

Gene co-expression network

sample Hb_000317_040 Hb_000317_040 Hb_003777_200 Hb_003777_200 Hb_000317_040--Hb_003777_200 Hb_000703_190 Hb_000703_190 Hb_000317_040--Hb_000703_190 Hb_019181_040 Hb_019181_040 Hb_000317_040--Hb_019181_040 Hb_002326_040 Hb_002326_040 Hb_000317_040--Hb_002326_040 Hb_000046_500 Hb_000046_500 Hb_000317_040--Hb_000046_500 Hb_012506_030 Hb_012506_030 Hb_000317_040--Hb_012506_030 Hb_003777_200--Hb_000046_500 Hb_000300_600 Hb_000300_600 Hb_003777_200--Hb_000300_600 Hb_011214_160 Hb_011214_160 Hb_003777_200--Hb_011214_160 Hb_001703_050 Hb_001703_050 Hb_003777_200--Hb_001703_050 Hb_001507_120 Hb_001507_120 Hb_003777_200--Hb_001507_120 Hb_000260_460 Hb_000260_460 Hb_000703_190--Hb_000260_460 Hb_000078_140 Hb_000078_140 Hb_000703_190--Hb_000078_140 Hb_001817_170 Hb_001817_170 Hb_000703_190--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_000703_190--Hb_000139_080 Hb_159809_070 Hb_159809_070 Hb_000703_190--Hb_159809_070 Hb_019181_040--Hb_000046_500 Hb_000349_260 Hb_000349_260 Hb_019181_040--Hb_000349_260 Hb_004754_050 Hb_004754_050 Hb_019181_040--Hb_004754_050 Hb_019181_040--Hb_000703_190 Hb_001269_330 Hb_001269_330 Hb_019181_040--Hb_001269_330 Hb_000214_050 Hb_000214_050 Hb_002326_040--Hb_000214_050 Hb_002326_040--Hb_012506_030 Hb_002811_270 Hb_002811_270 Hb_002326_040--Hb_002811_270 Hb_001518_080 Hb_001518_080 Hb_002326_040--Hb_001518_080 Hb_007248_030 Hb_007248_030 Hb_002326_040--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_002326_040--Hb_023313_040 Hb_007481_010 Hb_007481_010 Hb_000046_500--Hb_007481_010 Hb_000477_100 Hb_000477_100 Hb_000046_500--Hb_000477_100 Hb_002989_020 Hb_002989_020 Hb_000046_500--Hb_002989_020 Hb_079526_040 Hb_079526_040 Hb_000046_500--Hb_079526_040 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070 Hb_000441_220 Hb_000441_220 Hb_012506_030--Hb_000441_220 Hb_005137_040 Hb_005137_040 Hb_012506_030--Hb_005137_040 Hb_005918_010 Hb_005918_010 Hb_012506_030--Hb_005918_010 Hb_000085_170 Hb_000085_170 Hb_012506_030--Hb_000085_170 Hb_012506_030--Hb_002811_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.39321 8.96632 15.862 15.4826 8.93628 8.03532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.47166 5.8402 13.4626 9.73476 11.5672

CAGE analysis