Hb_000317_050

Information

Type -
Description -
Location Contig317: 38098-45010
Sequence    

Annotation

kegg
ID rcu:RCOM_1176260
description formiminotransferase-cyclodeaminase, putative
nr
ID XP_002517978.1
description formiminotransferase-cyclodeaminase, putative [Ricinus communis]
swissprot
ID Q99XR4
description Glutamate formimidoyltransferase OS=Streptococcus pyogenes serotype M1 GN=M5005_Spy1772 PE=1 SV=1
trembl
ID B9RW59
description Formiminotransferase-cyclodeaminase, putative OS=Ricinus communis GN=RCOM_1176260 PE=4 SV=1
Gene Ontology
ID GO:0005542
description formimidoyltransferase-cyclodeaminase-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33344: 38161-40598 , PASA_asmbl_33346: 43144-43914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_050 0.0 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
2 Hb_002592_060 0.0620873455 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001546_080 0.0631528066 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
4 Hb_001307_220 0.0672452588 - - PREDICTED: glutathione S-transferase omega-like 2 [Jatropha curcas]
5 Hb_000329_710 0.0677209593 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
6 Hb_000318_250 0.0690649369 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
7 Hb_002263_020 0.0738005961 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
8 Hb_000165_040 0.0739478143 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
9 Hb_001021_150 0.0745674803 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
10 Hb_000462_170 0.0763727158 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005867_070 0.0765103351 - - DNA binding protein, putative [Ricinus communis]
12 Hb_005489_020 0.0769690637 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007590_020 0.0770358045 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
14 Hb_007416_340 0.077503582 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000792_010 0.0779027346 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
16 Hb_008221_180 0.0782022882 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
17 Hb_001008_120 0.0783060895 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
18 Hb_002205_230 0.0783362315 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_000708_030 0.0789238286 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
20 Hb_009486_140 0.0794002828 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_050 Hb_000317_050 Hb_002592_060 Hb_002592_060 Hb_000317_050--Hb_002592_060 Hb_001546_080 Hb_001546_080 Hb_000317_050--Hb_001546_080 Hb_001307_220 Hb_001307_220 Hb_000317_050--Hb_001307_220 Hb_000329_710 Hb_000329_710 Hb_000317_050--Hb_000329_710 Hb_000318_250 Hb_000318_250 Hb_000317_050--Hb_000318_250 Hb_002263_020 Hb_002263_020 Hb_000317_050--Hb_002263_020 Hb_001021_150 Hb_001021_150 Hb_002592_060--Hb_001021_150 Hb_004846_220 Hb_004846_220 Hb_002592_060--Hb_004846_220 Hb_002592_060--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_002592_060--Hb_004254_090 Hb_006483_110 Hb_006483_110 Hb_002592_060--Hb_006483_110 Hb_001546_080--Hb_000318_250 Hb_003030_060 Hb_003030_060 Hb_001546_080--Hb_003030_060 Hb_001546_080--Hb_000329_710 Hb_006478_040 Hb_006478_040 Hb_001546_080--Hb_006478_040 Hb_005489_020 Hb_005489_020 Hb_001546_080--Hb_005489_020 Hb_005116_160 Hb_005116_160 Hb_001307_220--Hb_005116_160 Hb_001307_220--Hb_000318_250 Hb_001307_220--Hb_001546_080 Hb_000684_470 Hb_000684_470 Hb_001307_220--Hb_000684_470 Hb_002184_110 Hb_002184_110 Hb_001307_220--Hb_002184_110 Hb_000792_010 Hb_000792_010 Hb_000329_710--Hb_000792_010 Hb_011386_010 Hb_011386_010 Hb_000329_710--Hb_011386_010 Hb_001004_060 Hb_001004_060 Hb_000329_710--Hb_001004_060 Hb_002518_260 Hb_002518_260 Hb_000329_710--Hb_002518_260 Hb_009486_140 Hb_009486_140 Hb_000329_710--Hb_009486_140 Hb_000041_110 Hb_000041_110 Hb_000329_710--Hb_000041_110 Hb_000130_410 Hb_000130_410 Hb_000318_250--Hb_000130_410 Hb_000868_090 Hb_000868_090 Hb_000318_250--Hb_000868_090 Hb_000732_010 Hb_000732_010 Hb_000318_250--Hb_000732_010 Hb_000318_250--Hb_000329_710 Hb_000138_100 Hb_000138_100 Hb_002263_020--Hb_000138_100 Hb_001902_030 Hb_001902_030 Hb_002263_020--Hb_001902_030 Hb_007426_110 Hb_007426_110 Hb_002263_020--Hb_007426_110 Hb_003517_040 Hb_003517_040 Hb_002263_020--Hb_003517_040 Hb_004109_080 Hb_004109_080 Hb_002263_020--Hb_004109_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.74562 5.84253 5.06413 3.63505 5.86843 5.71762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.21919 6.89553 4.76641 5.29192 7.99669

CAGE analysis