Hb_000317_070

Information

Type -
Description -
Location Contig317: 50320-52308
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa013836mg
description hypothetical protein
nr
ID XP_009350687.1
description PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID W9RND8
description Uncharacterized protein OS=Morus notabilis GN=L484_022180 PE=4 SV=1
Gene Ontology
ID GO:0009853
description PREDICTED: uncharacterized protein LOC103942205 isoform X2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33349: 50324-52453 , PASA_asmbl_33350: 52806-58092
cDNA
(Sanger)
(ID:Location)		 009_B20.ab1: 50430-52453 , 019_H11.ab1: 50429-52416 , 023_O09.ab1: 50429-52453 , 024_O05.ab1: 51605-52453 , 030_J10.ab1: 51220-52333 , 037_E04.ab1: 50429-52453

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_070 0.0 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
2 Hb_004871_020 0.0538875841 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
3 Hb_007441_300 0.0699644403 - - ATP binding protein, putative [Ricinus communis]
4 Hb_174865_010 0.0700465917 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
5 Hb_000735_040 0.0754645265 - - 60S ribosomal protein L32A [Hevea brasiliensis]
6 Hb_000093_110 0.0764483738 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
7 Hb_153544_010 0.0795206676 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
8 Hb_000087_130 0.0804120598 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
9 Hb_000062_390 0.0829819175 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
10 Hb_000948_220 0.0830966626 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
11 Hb_010175_040 0.0832019597 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
12 Hb_001155_040 0.0841076864 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
13 Hb_001141_140 0.0872303297 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
14 Hb_000111_340 0.0899297095 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
15 Hb_010672_060 0.0901133143 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
16 Hb_143496_010 0.0912456087 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
17 Hb_002588_010 0.0917215475 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
18 Hb_004459_040 0.092298581 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
19 Hb_004102_070 0.094054953 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
20 Hb_000506_070 0.0942686069 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_070 Hb_000317_070 Hb_004871_020 Hb_004871_020 Hb_000317_070--Hb_004871_020 Hb_007441_300 Hb_007441_300 Hb_000317_070--Hb_007441_300 Hb_174865_010 Hb_174865_010 Hb_000317_070--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000317_070--Hb_000735_040 Hb_000093_110 Hb_000093_110 Hb_000317_070--Hb_000093_110 Hb_153544_010 Hb_153544_010 Hb_000317_070--Hb_153544_010 Hb_004871_020--Hb_153544_010 Hb_004871_020--Hb_007441_300 Hb_000525_020 Hb_000525_020 Hb_004871_020--Hb_000525_020 Hb_009711_020 Hb_009711_020 Hb_004871_020--Hb_009711_020 Hb_000030_290 Hb_000030_290 Hb_004871_020--Hb_000030_290 Hb_007441_300--Hb_174865_010 Hb_003018_020 Hb_003018_020 Hb_007441_300--Hb_003018_020 Hb_004459_040 Hb_004459_040 Hb_007441_300--Hb_004459_040 Hb_000948_220 Hb_000948_220 Hb_007441_300--Hb_000948_220 Hb_174865_010--Hb_000735_040 Hb_000676_160 Hb_000676_160 Hb_174865_010--Hb_000676_160 Hb_179296_010 Hb_179296_010 Hb_174865_010--Hb_179296_010 Hb_174865_010--Hb_003018_020 Hb_000506_070 Hb_000506_070 Hb_000735_040--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_000735_040--Hb_001141_140 Hb_000735_040--Hb_000093_110 Hb_008921_020 Hb_008921_020 Hb_000735_040--Hb_008921_020 Hb_000735_040--Hb_003018_020 Hb_002588_010 Hb_002588_010 Hb_000093_110--Hb_002588_010 Hb_006478_160 Hb_006478_160 Hb_000093_110--Hb_006478_160 Hb_000645_140 Hb_000645_140 Hb_000093_110--Hb_000645_140 Hb_000567_410 Hb_000567_410 Hb_000093_110--Hb_000567_410 Hb_000093_110--Hb_174865_010 Hb_153544_010--Hb_000030_290 Hb_000417_360 Hb_000417_360 Hb_153544_010--Hb_000417_360 Hb_091433_020 Hb_091433_020 Hb_153544_010--Hb_091433_020 Hb_143496_010 Hb_143496_010 Hb_153544_010--Hb_143496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.65 52.5421 99.279 116.618 54.0757 69.0639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
278.744 403.674 132.931 87.0257 62.4165

CAGE analysis