Hb_000317_080

Information

Type -
Description -
Location Contig317: 52748-58887
Sequence    

Annotation

kegg
ID tcc:TCM_007958
description Galacturonosyltransferase 10
nr
ID XP_012088353.1
description PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
swissprot
ID Q9SKT6
description Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2
trembl
ID A0A067JXE1
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_25846 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33350: 52806-58092
cDNA
(Sanger)
(ID:Location)		 041_O22.ab1: 54220-58092 , 044_D06.ab1: 54196-58059

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_080 0.0 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
2 Hb_001268_230 0.1059569045 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
3 Hb_098315_110 0.1070620271 - - conserved hypothetical protein [Ricinus communis]
4 Hb_053543_010 0.1111812458 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000987_050 0.1253521811 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
6 Hb_004648_040 0.1274715715 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
7 Hb_001628_110 0.1285804253 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
8 Hb_130177_010 0.1334948571 - - hypothetical protein RCOM_0897890 [Ricinus communis]
9 Hb_005410_010 0.1363863866 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
10 Hb_001946_360 0.1414615898 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
11 Hb_010368_070 0.1474483655 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000173_210 0.1478497321 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
13 Hb_154381_050 0.1497261514 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000300_530 0.1497342941 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
15 Hb_000210_130 0.1500515283 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
16 Hb_000395_140 0.155172918 - - Oligopeptide transporter, putative [Ricinus communis]
17 Hb_000331_610 0.1552602894 - - hypothetical protein B456_003G108600 [Gossypium raimondii]
18 Hb_010931_110 0.155595353 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_001341_040 0.1567797372 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
20 Hb_002172_030 0.1576386261 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_080 Hb_000317_080 Hb_001268_230 Hb_001268_230 Hb_000317_080--Hb_001268_230 Hb_098315_110 Hb_098315_110 Hb_000317_080--Hb_098315_110 Hb_053543_010 Hb_053543_010 Hb_000317_080--Hb_053543_010 Hb_000987_050 Hb_000987_050 Hb_000317_080--Hb_000987_050 Hb_004648_040 Hb_004648_040 Hb_000317_080--Hb_004648_040 Hb_001628_110 Hb_001628_110 Hb_000317_080--Hb_001628_110 Hb_001268_230--Hb_004648_040 Hb_001268_230--Hb_098315_110 Hb_001268_230--Hb_001628_110 Hb_001268_230--Hb_053543_010 Hb_000300_530 Hb_000300_530 Hb_001268_230--Hb_000300_530 Hb_098315_110--Hb_000300_530 Hb_098315_110--Hb_004648_040 Hb_130177_010 Hb_130177_010 Hb_098315_110--Hb_130177_010 Hb_006029_010 Hb_006029_010 Hb_098315_110--Hb_006029_010 Hb_053543_010--Hb_000987_050 Hb_043959_010 Hb_043959_010 Hb_053543_010--Hb_043959_010 Hb_053543_010--Hb_098315_110 Hb_053543_010--Hb_130177_010 Hb_010931_110 Hb_010931_110 Hb_000987_050--Hb_010931_110 Hb_000987_050--Hb_130177_010 Hb_000987_050--Hb_043959_010 Hb_000987_050--Hb_098315_110 Hb_011021_030 Hb_011021_030 Hb_004648_040--Hb_011021_030 Hb_004648_040--Hb_000300_530 Hb_000988_050 Hb_000988_050 Hb_004648_040--Hb_000988_050 Hb_002078_040 Hb_002078_040 Hb_001628_110--Hb_002078_040 Hb_002172_030 Hb_002172_030 Hb_001628_110--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_001628_110--Hb_154381_050 Hb_005410_010 Hb_005410_010 Hb_001628_110--Hb_005410_010 Hb_043637_010 Hb_043637_010 Hb_001628_110--Hb_043637_010 Hb_003507_020 Hb_003507_020 Hb_001628_110--Hb_003507_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.5678 10.8501 5.18961 7.44356 201.417 75.7323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0033 27.2826 31.1305 9.72512 3.61681

CAGE analysis