Hb_000317_090

Information

Type -
Description -
Location Contig317: 63633-65949
Sequence    

Annotation

kegg
ID rcu:RCOM_1176360
description hypothetical protein
nr
ID XP_002517988.1
description hypothetical protein RCOM_1176360 [Ricinus communis]
swissprot
ID Q9ZR09
description Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana GN=At4g03220 PE=3 SV=1
trembl
ID B9RW69
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1176360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_090 0.0 - - hypothetical protein RCOM_1176360 [Ricinus communis]
2 Hb_002837_090 0.132453221 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
3 Hb_001276_010 0.1524513343 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
4 Hb_003772_080 0.1647226151 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
5 Hb_171659_010 0.1778566327 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
6 Hb_022452_010 0.2005962297 - - -
7 Hb_003816_020 0.2086837064 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
8 Hb_000176_060 0.2177035001 - - unnamed protein product [Vitis vinifera]
9 Hb_032018_010 0.2302406242 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
10 Hb_000014_130 0.2475973321 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
11 Hb_007978_020 0.2490053943 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
12 Hb_101040_010 0.2578090216 - - -
13 Hb_041237_010 0.2586497727 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000062_500 0.2587753581 - - PREDICTED: urease-like [Zea mays]
15 Hb_003772_020 0.2605659897 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
16 Hb_012150_070 0.2630924542 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
17 Hb_003609_010 0.2639403222 - - -
18 Hb_003398_010 0.2687793894 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
19 Hb_000559_050 0.2802098504 - - hypothetical protein JCGZ_20429 [Jatropha curcas]
20 Hb_040779_010 0.2814810048 - - -

Gene co-expression network

sample Hb_000317_090 Hb_000317_090 Hb_002837_090 Hb_002837_090 Hb_000317_090--Hb_002837_090 Hb_001276_010 Hb_001276_010 Hb_000317_090--Hb_001276_010 Hb_003772_080 Hb_003772_080 Hb_000317_090--Hb_003772_080 Hb_171659_010 Hb_171659_010 Hb_000317_090--Hb_171659_010 Hb_022452_010 Hb_022452_010 Hb_000317_090--Hb_022452_010 Hb_003816_020 Hb_003816_020 Hb_000317_090--Hb_003816_020 Hb_032018_010 Hb_032018_010 Hb_002837_090--Hb_032018_010 Hb_000014_130 Hb_000014_130 Hb_002837_090--Hb_000014_130 Hb_002837_090--Hb_001276_010 Hb_000062_500 Hb_000062_500 Hb_002837_090--Hb_000062_500 Hb_007904_190 Hb_007904_190 Hb_002837_090--Hb_007904_190 Hb_001276_010--Hb_022452_010 Hb_000176_060 Hb_000176_060 Hb_001276_010--Hb_000176_060 Hb_001276_010--Hb_171659_010 Hb_001276_010--Hb_003772_080 Hb_003222_010 Hb_003222_010 Hb_001276_010--Hb_003222_010 Hb_003772_080--Hb_171659_010 Hb_000559_050 Hb_000559_050 Hb_003772_080--Hb_000559_050 Hb_011909_090 Hb_011909_090 Hb_003772_080--Hb_011909_090 Hb_001589_070 Hb_001589_070 Hb_003772_080--Hb_001589_070 Hb_171659_010--Hb_022452_010 Hb_171659_010--Hb_003816_020 Hb_004939_020 Hb_004939_020 Hb_171659_010--Hb_004939_020 Hb_022452_010--Hb_000176_060 Hb_022452_010--Hb_003816_020 Hb_000205_070 Hb_000205_070 Hb_022452_010--Hb_000205_070 Hb_001951_120 Hb_001951_120 Hb_022452_010--Hb_001951_120 Hb_003816_020--Hb_004939_020 Hb_003816_020--Hb_001276_010 Hb_003816_020--Hb_000205_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0224884 0.0111669 0 0 0.0112622 0.0219348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis