Hb_000317_140

Information

Type -
Description -
Location Contig317: 94293-96201
Sequence    

Annotation

kegg
ID mdm:103414993
description vacuolar protein sorting-associated protein 18 homolog
nr
ID KDO55778.1
description hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
swissprot
ID P59015
description Vacuolar protein sorting-associated protein 18 homolog OS=Danio rerio GN=vps18 PE=2 SV=2
trembl
ID A0A067EL40
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0019781mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 18 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_140 0.0 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
2 Hb_002168_010 0.1268020175 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
3 Hb_146675_010 0.1573760244 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
4 Hb_000015_070 0.1603234244 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
5 Hb_004709_020 0.1642478934 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
6 Hb_004466_060 0.1693291656 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
7 Hb_150023_010 0.1699611228 - - 50S ribosomal protein L2, putative [Ricinus communis]
8 Hb_002192_090 0.1704317731 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
9 Hb_106415_010 0.1711368517 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
10 Hb_000825_030 0.1715343385 - - zinc binding dehydrogenase, putative [Ricinus communis]
11 Hb_002079_040 0.1759956132 - - hypothetical protein VITISV_018542 [Vitis vinifera]
12 Hb_000635_070 0.1760944341 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
13 Hb_000074_060 0.178597453 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
14 Hb_183522_010 0.1819428463 - - Far upstream element-binding protein, putative [Ricinus communis]
15 Hb_006663_090 0.1823994579 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
16 Hb_002200_040 0.1842867773 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
17 Hb_000053_030 0.1851669576 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
18 Hb_002562_110 0.1861608039 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
19 Hb_082006_010 0.186243347 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009270_030 0.1867989362 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000317_140 Hb_000317_140 Hb_002168_010 Hb_002168_010 Hb_000317_140--Hb_002168_010 Hb_146675_010 Hb_146675_010 Hb_000317_140--Hb_146675_010 Hb_000015_070 Hb_000015_070 Hb_000317_140--Hb_000015_070 Hb_004709_020 Hb_004709_020 Hb_000317_140--Hb_004709_020 Hb_004466_060 Hb_004466_060 Hb_000317_140--Hb_004466_060 Hb_150023_010 Hb_150023_010 Hb_000317_140--Hb_150023_010 Hb_007763_050 Hb_007763_050 Hb_002168_010--Hb_007763_050 Hb_004669_030 Hb_004669_030 Hb_002168_010--Hb_004669_030 Hb_000641_020 Hb_000641_020 Hb_002168_010--Hb_000641_020 Hb_002168_010--Hb_000015_070 Hb_000635_070 Hb_000635_070 Hb_002168_010--Hb_000635_070 Hb_099878_050 Hb_099878_050 Hb_146675_010--Hb_099878_050 Hb_002192_090 Hb_002192_090 Hb_146675_010--Hb_002192_090 Hb_090158_010 Hb_090158_010 Hb_146675_010--Hb_090158_010 Hb_133724_010 Hb_133724_010 Hb_146675_010--Hb_133724_010 Hb_002388_010 Hb_002388_010 Hb_146675_010--Hb_002388_010 Hb_001396_250 Hb_001396_250 Hb_000015_070--Hb_001396_250 Hb_003371_170 Hb_003371_170 Hb_000015_070--Hb_003371_170 Hb_108227_010 Hb_108227_010 Hb_000015_070--Hb_108227_010 Hb_166480_010 Hb_166480_010 Hb_000015_070--Hb_166480_010 Hb_011214_100 Hb_011214_100 Hb_000015_070--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_000015_070--Hb_012675_080 Hb_004303_040 Hb_004303_040 Hb_004709_020--Hb_004303_040 Hb_009270_030 Hb_009270_030 Hb_004709_020--Hb_009270_030 Hb_002562_110 Hb_002562_110 Hb_004709_020--Hb_002562_110 Hb_082006_010 Hb_082006_010 Hb_004709_020--Hb_082006_010 Hb_008447_030 Hb_008447_030 Hb_004709_020--Hb_008447_030 Hb_038237_010 Hb_038237_010 Hb_004709_020--Hb_038237_010 Hb_000053_030 Hb_000053_030 Hb_004466_060--Hb_000053_030 Hb_100137_010 Hb_100137_010 Hb_004466_060--Hb_100137_010 Hb_000168_010 Hb_000168_010 Hb_004466_060--Hb_000168_010 Hb_089202_010 Hb_089202_010 Hb_004466_060--Hb_089202_010 Hb_002611_030 Hb_002611_030 Hb_004466_060--Hb_002611_030 Hb_004466_060--Hb_002562_110 Hb_005527_020 Hb_005527_020 Hb_150023_010--Hb_005527_020 Hb_004117_160 Hb_004117_160 Hb_150023_010--Hb_004117_160 Hb_000991_070 Hb_000991_070 Hb_150023_010--Hb_000991_070 Hb_000107_200 Hb_000107_200 Hb_150023_010--Hb_000107_200 Hb_002079_050 Hb_002079_050 Hb_150023_010--Hb_002079_050 Hb_000825_030 Hb_000825_030 Hb_150023_010--Hb_000825_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144271 0.277596 0.514925 2.01962 0.216156 2.10419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.820004 0.563884 0.140677 0.297497 0.466918

CAGE analysis