Hb_000317_160

Information

Type -
Description -
Location Contig317: 117295-124872
Sequence    

Annotation

kegg
ID tcc:TCM_031297
description 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
nr
ID XP_007021244.1
description 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A0E0KVQ2
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33368: 120333-120556 , PASA_asmbl_33370: 122589-122967 , PASA_asmbl_33371: 123354-123734
cDNA
(Sanger)
(ID:Location)		 044_D15.ab1: 121569-122127

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_160 0.0 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
2 Hb_005725_230 0.1160275042 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
3 Hb_002685_150 0.1613793875 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
4 Hb_000023_160 0.1615559982 - - PREDICTED: uncharacterized protein LOC105636423 isoform X1 [Jatropha curcas]
5 Hb_002217_470 0.1685293806 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
6 Hb_004137_100 0.1839190833 - - PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
7 Hb_027746_020 0.1933415696 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Jatropha curcas]
8 Hb_000029_090 0.1963310765 - - Nicalin precursor, putative [Ricinus communis]
9 Hb_000098_030 0.2117780056 - - MLO-like protein 4 [Gossypium arboreum]
10 Hb_007185_040 0.2175340098 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
11 Hb_001140_360 0.2181026642 - - -
12 Hb_000120_720 0.2223104281 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
13 Hb_000678_010 0.2224060131 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
14 Hb_001584_260 0.2241219346 - - zinc finger protein, putative [Ricinus communis]
15 Hb_007545_120 0.2248112085 - - NADH:cytochrome b5 reductase [Vernicia fordii]
16 Hb_000296_010 0.2250738402 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
17 Hb_009193_090 0.2259333723 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
18 Hb_000622_200 0.2273771715 - - aldose 1-epimerase, putative [Ricinus communis]
19 Hb_001004_140 0.2274956472 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
20 Hb_033772_070 0.2291397942 - - PREDICTED: uncharacterized protein LOC105633681 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_160 Hb_000317_160 Hb_005725_230 Hb_005725_230 Hb_000317_160--Hb_005725_230 Hb_002685_150 Hb_002685_150 Hb_000317_160--Hb_002685_150 Hb_000023_160 Hb_000023_160 Hb_000317_160--Hb_000023_160 Hb_002217_470 Hb_002217_470 Hb_000317_160--Hb_002217_470 Hb_004137_100 Hb_004137_100 Hb_000317_160--Hb_004137_100 Hb_027746_020 Hb_027746_020 Hb_000317_160--Hb_027746_020 Hb_000098_030 Hb_000098_030 Hb_005725_230--Hb_000098_030 Hb_000296_010 Hb_000296_010 Hb_005725_230--Hb_000296_010 Hb_005725_230--Hb_027746_020 Hb_005725_230--Hb_004137_100 Hb_005725_230--Hb_002685_150 Hb_003464_070 Hb_003464_070 Hb_002685_150--Hb_003464_070 Hb_009615_020 Hb_009615_020 Hb_002685_150--Hb_009615_020 Hb_002685_150--Hb_027746_020 Hb_002685_150--Hb_000023_160 Hb_000023_160--Hb_002217_470 Hb_000023_160--Hb_009615_020 Hb_000654_030 Hb_000654_030 Hb_000023_160--Hb_000654_030 Hb_001140_070 Hb_001140_070 Hb_000023_160--Hb_001140_070 Hb_002217_470--Hb_000654_030 Hb_026549_010 Hb_026549_010 Hb_002217_470--Hb_026549_010 Hb_002148_020 Hb_002148_020 Hb_002217_470--Hb_002148_020 Hb_034552_030 Hb_034552_030 Hb_002217_470--Hb_034552_030 Hb_004586_150 Hb_004586_150 Hb_004137_100--Hb_004586_150 Hb_009193_090 Hb_009193_090 Hb_004137_100--Hb_009193_090 Hb_000184_240 Hb_000184_240 Hb_004137_100--Hb_000184_240 Hb_000600_060 Hb_000600_060 Hb_004137_100--Hb_000600_060 Hb_007545_120 Hb_007545_120 Hb_004137_100--Hb_007545_120 Hb_002391_360 Hb_002391_360 Hb_004137_100--Hb_002391_360 Hb_027746_020--Hb_009193_090 Hb_133004_010 Hb_133004_010 Hb_027746_020--Hb_133004_010 Hb_002676_120 Hb_002676_120 Hb_027746_020--Hb_002676_120 Hb_027746_020--Hb_007545_120 Hb_003050_260 Hb_003050_260 Hb_027746_020--Hb_003050_260 Hb_027746_020--Hb_004137_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.1632 3.46879 14.0607 10.5776 4.73019 5.26841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15793 7.27446 2.31139 19.0084 0.14281

CAGE analysis