Hb_000317_240

Information

Type -
Description -
Location Contig317: 183754-189017
Sequence    

Annotation

kegg
ID rcu:RCOM_1176630
description hypothetical protein
nr
ID XP_012088372.1
description PREDICTED: protein DYAD [Jatropha curcas]
swissprot
ID Q9FGN8
description Protein DYAD OS=Arabidopsis thaliana GN=DYAD PE=1 SV=2
trembl
ID A0A067JN58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25865 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33383: 183832-186738 , PASA_asmbl_33384: 186922-188936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_240 0.0 - - PREDICTED: protein DYAD [Jatropha curcas]
2 Hb_002530_030 0.0438034511 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
3 Hb_000757_060 0.0585659497 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
4 Hb_000768_090 0.0600010077 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
5 Hb_000465_460 0.061815898 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
6 Hb_058999_020 0.0641967297 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
7 Hb_000504_140 0.0643718754 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
8 Hb_001758_100 0.0653485501 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
9 Hb_003525_010 0.0669511064 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
10 Hb_000041_270 0.0680392442 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
11 Hb_000039_220 0.0682561908 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
12 Hb_000227_080 0.0711372893 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000215_110 0.0727130412 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
14 Hb_003125_120 0.0743914237 - - PREDICTED: TITAN-like protein [Jatropha curcas]
15 Hb_004310_150 0.0749476325 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
16 Hb_002499_040 0.0754134192 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
17 Hb_000684_380 0.0763567546 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
18 Hb_003780_030 0.0763904126 - - PREDICTED: protein CMSS1 [Jatropha curcas]
19 Hb_000016_250 0.0766497449 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
20 Hb_003126_050 0.0769116355 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_240 Hb_000317_240 Hb_002530_030 Hb_002530_030 Hb_000317_240--Hb_002530_030 Hb_000757_060 Hb_000757_060 Hb_000317_240--Hb_000757_060 Hb_000768_090 Hb_000768_090 Hb_000317_240--Hb_000768_090 Hb_000465_460 Hb_000465_460 Hb_000317_240--Hb_000465_460 Hb_058999_020 Hb_058999_020 Hb_000317_240--Hb_058999_020 Hb_000504_140 Hb_000504_140 Hb_000317_240--Hb_000504_140 Hb_120410_010 Hb_120410_010 Hb_002530_030--Hb_120410_010 Hb_001305_010 Hb_001305_010 Hb_002530_030--Hb_001305_010 Hb_000016_250 Hb_000016_250 Hb_002530_030--Hb_000016_250 Hb_004310_150 Hb_004310_150 Hb_002530_030--Hb_004310_150 Hb_011995_010 Hb_011995_010 Hb_002530_030--Hb_011995_010 Hb_000757_060--Hb_058999_020 Hb_001242_060 Hb_001242_060 Hb_000757_060--Hb_001242_060 Hb_000538_270 Hb_000538_270 Hb_000757_060--Hb_000538_270 Hb_002499_040 Hb_002499_040 Hb_000757_060--Hb_002499_040 Hb_001248_060 Hb_001248_060 Hb_000757_060--Hb_001248_060 Hb_000039_220 Hb_000039_220 Hb_000768_090--Hb_000039_220 Hb_000684_380 Hb_000684_380 Hb_000768_090--Hb_000684_380 Hb_000468_060 Hb_000468_060 Hb_000768_090--Hb_000468_060 Hb_005054_350 Hb_005054_350 Hb_000768_090--Hb_005054_350 Hb_000215_110 Hb_000215_110 Hb_000768_090--Hb_000215_110 Hb_000465_460--Hb_058999_020 Hb_004931_070 Hb_004931_070 Hb_000465_460--Hb_004931_070 Hb_000465_460--Hb_001242_060 Hb_001758_100 Hb_001758_100 Hb_000465_460--Hb_001758_100 Hb_001157_040 Hb_001157_040 Hb_000465_460--Hb_001157_040 Hb_005779_060 Hb_005779_060 Hb_058999_020--Hb_005779_060 Hb_000227_080 Hb_000227_080 Hb_058999_020--Hb_000227_080 Hb_058999_020--Hb_000215_110 Hb_002044_080 Hb_002044_080 Hb_058999_020--Hb_002044_080 Hb_005539_280 Hb_005539_280 Hb_000504_140--Hb_005539_280 Hb_000504_140--Hb_001758_100 Hb_000504_140--Hb_005779_060 Hb_001633_050 Hb_001633_050 Hb_000504_140--Hb_001633_050 Hb_005618_170 Hb_005618_170 Hb_000504_140--Hb_005618_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.62128 6.61486 8.51856 5.37262 9.81737 11.2142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.29156 13.7985 9.15895 9.41031 5.08646

CAGE analysis