Hb_000317_260

Information

Type -
Description -
Location Contig317: 196744-201343
Sequence    

Annotation

kegg
ID rcu:RCOM_1176760
description acyl-CoA thioesterase, putative
nr
ID ABK94218.1
description unknown [Populus trichocarpa]
swissprot
ID Q5R833
description Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN=ACOT13 PE=2 SV=1
trembl
ID A9PCW5
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0005777
description acyl-coenzyme a thioesterase 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33388: 196817-201204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_260 0.0 - - unknown [Populus trichocarpa]
2 Hb_004440_060 0.0605159274 - - aldose 1-epimerase, putative [Ricinus communis]
3 Hb_003411_090 0.0608133235 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
4 Hb_004951_060 0.0728751488 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
5 Hb_007904_230 0.0825371786 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
6 Hb_003266_030 0.0838440038 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
7 Hb_001369_790 0.0881118307 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
8 Hb_062226_060 0.0888856198 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
9 Hb_004452_120 0.0892544381 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
10 Hb_003747_230 0.0916655187 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
11 Hb_000364_050 0.0924807301 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
12 Hb_006846_150 0.0929274232 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001946_390 0.0930977993 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
14 Hb_007192_030 0.0939147197 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
15 Hb_000167_110 0.0943733175 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
16 Hb_001301_340 0.0945359412 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
17 Hb_000811_070 0.0952493904 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
18 Hb_002759_190 0.0964768876 - - PREDICTED: protein NLRC3 [Jatropha curcas]
19 Hb_007534_050 0.1006528879 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000394_180 0.1007393301 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_260 Hb_000317_260 Hb_004440_060 Hb_004440_060 Hb_000317_260--Hb_004440_060 Hb_003411_090 Hb_003411_090 Hb_000317_260--Hb_003411_090 Hb_004951_060 Hb_004951_060 Hb_000317_260--Hb_004951_060 Hb_007904_230 Hb_007904_230 Hb_000317_260--Hb_007904_230 Hb_003266_030 Hb_003266_030 Hb_000317_260--Hb_003266_030 Hb_001369_790 Hb_001369_790 Hb_000317_260--Hb_001369_790 Hb_001578_020 Hb_001578_020 Hb_004440_060--Hb_001578_020 Hb_004440_060--Hb_001369_790 Hb_007534_050 Hb_007534_050 Hb_004440_060--Hb_007534_050 Hb_002053_010 Hb_002053_010 Hb_004440_060--Hb_002053_010 Hb_004644_030 Hb_004644_030 Hb_004440_060--Hb_004644_030 Hb_003411_090--Hb_003266_030 Hb_000167_110 Hb_000167_110 Hb_003411_090--Hb_000167_110 Hb_003411_090--Hb_004951_060 Hb_011671_260 Hb_011671_260 Hb_003411_090--Hb_011671_260 Hb_004452_120 Hb_004452_120 Hb_003411_090--Hb_004452_120 Hb_062226_060 Hb_062226_060 Hb_004951_060--Hb_062226_060 Hb_000394_180 Hb_000394_180 Hb_004951_060--Hb_000394_180 Hb_001662_130 Hb_001662_130 Hb_004951_060--Hb_001662_130 Hb_007192_030 Hb_007192_030 Hb_004951_060--Hb_007192_030 Hb_006846_150 Hb_006846_150 Hb_004951_060--Hb_006846_150 Hb_000364_050 Hb_000364_050 Hb_007904_230--Hb_000364_050 Hb_007904_230--Hb_003266_030 Hb_000811_070 Hb_000811_070 Hb_007904_230--Hb_000811_070 Hb_007904_230--Hb_007192_030 Hb_000080_130 Hb_000080_130 Hb_007904_230--Hb_000080_130 Hb_049575_010 Hb_049575_010 Hb_007904_230--Hb_049575_010 Hb_003266_030--Hb_011671_260 Hb_004965_110 Hb_004965_110 Hb_003266_030--Hb_004965_110 Hb_000086_080 Hb_000086_080 Hb_003266_030--Hb_000086_080 Hb_000926_080 Hb_000926_080 Hb_003266_030--Hb_000926_080 Hb_001369_790--Hb_007192_030 Hb_000392_550 Hb_000392_550 Hb_001369_790--Hb_000392_550 Hb_001369_790--Hb_000086_080 Hb_001369_790--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_001369_790--Hb_000622_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4751 14.3056 60.0078 45.4832 19.2104 15.4922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.9401 45.8604 26.4564 31.5838 70.7343

CAGE analysis